HL_4V4J_110
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 4V4J|1|z|U|33
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4J_110 not in the Motif Atlas
- Homologous match to HL_4TUE_034
- Geometric discrepancy: 0.2056
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
4V4J|1|z|G|31
4V4J|1|z|C|32
4V4J|1|z|U|33
4V4J|1|z|C|34
4V4J|1|z|A|35
4V4J|1|z|U|36
4V4J|1|z|A|37
4V4J|1|z|A|38
4V4J|1|z|C|39
Current chains
- Chain z
- P-site tRNAfMET
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 3
- MRNA
- Chain j
- 30S ribosomal protein S9
- Chain n
- 30S ribosomal protein S13
- Chain y
- Small subunit ribosomal RNA; SSU rRNA
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