3D structure

PDB id
4V4J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.83 Å

Loop

Sequence
CGCGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V4J_114 not in the Motif Atlas
Homologous match to HL_4LFB_023
Geometric discrepancy: 0.4675
The information below is about HL_4LFB_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_39005.1
Basepair signature
cWW-tSH-R-R
Number of instances in this motif group
275

Unit IDs

4V4J|1|y|C|102|||C
4V4J|1|y|G|1029
4V4J|1|y|C|1030
4V4J|1|y|G|1031
4V4J|1|y|A|103|||A
4V4J|1|y|G|103|||B

Current chains

Chain y
16S RNA

Nearby chains

No other chains within 10Å

Coloring options:


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