HL_4V4J_115

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CAGCC(7MG)

Length

6 nucleotides

Bulged bases

4V4J|1|y|A|523

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4J_115 not in the Motif Atlas

Homologous match to HL_4LFB_033

Geometric discrepancy: 0.3814

The information below is about HL_4LFB_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4V4J|1|y|C|522
4V4J|1|y|A|523
4V4J|1|y|G|524
4V4J|1|y|C|525
4V4J|1|y|C|526
4V4J|1|y|7MG|527

Current chains

Chain y

16S RNA

Nearby chains

Chain m

30S ribosomal protein S12