HL_4V4J_116
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GCGAAGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4J_116 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.3097
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27483.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4V4J|1|y|G|725
4V4J|1|y|C|726
4V4J|1|y|G|727
4V4J|1|y|A|728
4V4J|1|y|A|729
4V4J|1|y|G|730
4V4J|1|y|G|731
4V4J|1|y|C|732
Current chains
- Chain y
- 16S RNA
Nearby chains
- Chain p
- 30S ribosomal protein S15
- Chain s
- 30S ribosomal protein S18
Coloring options: