HL_4V4P_002

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CGGUAGCGG

Length

9 nucleotides

Bulged bases

4V4P|1|AA|U|90, 4V4P|1|AA|A|91

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4P_002 not in the Motif Atlas

Homologous match to HL_4WF9_002

Geometric discrepancy: 0.5084

The information below is about HL_4WF9_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_00911.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4V4P|1|AA|C|87
4V4P|1|AA|G|88
4V4P|1|AA|G|89
4V4P|1|AA|U|90
4V4P|1|AA|A|91
4V4P|1|AA|G|92
4V4P|1|AA|C|93
4V4P|1|AA|G|94
4V4P|1|AA|G|95

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AU

50S ribosomal protein L24

Chain AW

50S ribosomal protein L29