Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V4P_0011/AA/59:68Pseudoknot with intercalation
homologous
HL_7A0S_001
HL_17803.1
HL_4V4P_0021/AA/87:95Pseudoknot geometry
homologous
HL_4WF9_002
HL_00911.2
HL_4V4P_0031/AA/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.7
HL_4V4P_0051/AA/188:208No text annotation
HL_4V4P_1301/AA/225:230No text annotation
homologous
HL_4WF9_007
HL_51020.2
HL_4V4P_0071/AA/246:252No text annotation
geometric
HL_7RQB_011
NA
HL_4V4P_0081/AA/270I:270QNo text annotation
homologous
HL_8VTW_008
NA
HL_4V4P_1061/AA/270:270No text annotation
HL_4V4P_0091/AA/305:312No text annotation
homologous
HL_7RQB_010
NA
HL_4V4P_0101/AA/319:323No text annotation
homologous
HL_7A0S_011
HL_75660.7
HL_4V4P_0111/AA/327:335T-loop with unstacked turn
homologous
HL_4WF9_012
HL_27670.4
HL_4V4P_1081/AA/383:391No text annotation
HL_4V4P_0131/AA/410:417No text annotation
homologous
HL_7RQB_014
NA
HL_4V4P_1091/AA/462:467GNRA
homologous
HL_7A0S_015
HL_34789.4
HL_4V4P_0151/AA/487:493GNRA
homologous
HL_4WF9_016
HL_34789.4
HL_4V4P_1311/AA/544:549No text annotation
HL_4V4P_1321/AA/630A:1635Pseudoknot geometry with 3' bulge
homologous
HL_7A0S_073
HL_49081.1
HL_4V4P_0191/AA/744:753No text annotation
homologous
HL_7RQB_023
NA
HL_4V4P_1331/AA/779:785UNCG variation
homologous
HL_7A0S_023
HL_51020.2
HL_4V4P_0211/AA/826:831No text annotation
homologous
HL_7A0S_024
HL_27530.1
HL_4V4P_0221/AA/884:892No text annotation
HL_4V4P_0231/AA/955:962GNRA
homologous
HL_7A0S_026
HL_34789.4
HL_4V4P_0241/AA/978:985No text annotation
homologous
HL_7A0S_027
HL_47171.1
HL_4V4P_1341/AA/1064:1074No text annotation
HL_4V4P_0261/AA/1092:1099No text annotation
homologous
HL_8VTW_029
NA
HL_4V4P_0271/AA/1171:1178Externally structured
geometric
HL_5TBW_022
NA
HL_4V4P_0281/AA/1221:1228No text annotation
HL_4V4P_0291/AA/1281:1289No text annotation
homologous
HL_7RQB_033
NA
HL_4V4P_0301/AA/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_7A0S_033
HL_49081.1
HL_4V4P_0311/AA/1363:1368GNRA
homologous
HL_7RQB_035
NA
HL_4V4P_0321/AA/1389:1398No text annotation
homologous
HL_5J7L_168
NA
HL_4V4P_1121/AA/1448:1463No text annotation
HL_4V4P_0331/AA/1450:1461Pseudoknot
homologous
HL_7A0S_036
HL_00824.1
HL_4V4P_0341/AA/1492:1498No text annotation
HL_4V4P_1131/AA/1611:1620No text annotation
HL_4V4P_0361/AA/1612:1619No text annotation
homologous
HL_4WF9_038
HL_28592.2
HL_4V4P_1351/AA/1686:1702No text annotation
HL_4V4P_0381/AA/1691:1696UNCG
homologous
HL_4WF9_040
HL_61337.3
HL_4V4P_1361/AA/1717:1742No text annotation
HL_4V4P_0401/AA/1752:1756No text annotation
homologous
HL_7A0S_044
HL_80709.5
HL_4V4P_0411/AA/1777:1787No text annotation
homologous
HL_7RQB_045
NA
HL_4V4P_0421/AA/1806:1811No text annotation
HL_4V4P_0431/AA/1864:1878GNRA
homologous
HL_7RQB_047
NA
HL_4V4P_1371/AA/1911:1919No text annotation
HL_4V4P_0451/AA/1949:1957No text annotation
homologous
HL_7A0S_048
HL_61418.2
HL_4V4P_0461/AA/2027:2036No text annotation
homologous
HL_7A0S_049
HL_78372.1
HL_4V4P_1381/AA/2140:2151No text annotation
HL_4V4P_0481/AA/2209:2215No text annotation
HL_4V4P_0491/AA/2248:2256No text annotation
homologous
HL_5J7L_186
NA
HL_4V4P_0501/AA/2264:2276No text annotation
homologous
HL_7A0S_053
HL_02042.1
HL_4V4P_0511/AA/2304:2312No text annotation
HL_4V4P_1161/AA/2323:2332No text annotation
geometric
HL_2JLT_001
HL_14856.1
HL_4V4P_0521/AA/2324:2331Pseudoknot geometry
homologous
HL_7RQB_056
NA
HL_4V4P_0531/AA/2355:2362GNRA with extra cWW
homologous
HL_4WF9_053
HL_87268.2
HL_4V4P_0541/AA/2374:2379GNRA
homologous
HL_4WF9_054
HL_34789.4
HL_4V4P_0551/AA/2404:2413No text annotation
homologous
HL_7A0S_058
HL_51853.2
HL_4V4P_1171/AA/2466:2484No text annotation
HL_4V4P_0561/AA/2471:2479No text annotation
homologous
HL_5J7L_193
NA
HL_4V4P_0571/AA/2528:2535No text annotation
homologous
HL_7RQB_061
NA
HL_4V4P_0581/AA/2551:2557No text annotation
homologous
HL_4WF9_058
HL_48677.1
HL_4V4P_1181/AA/2593:2600tRNA anticodon loop
geometric
HL_3RG5_006
HL_87268.2
HL_4V4P_0601/AA/2652:2668No text annotation
HL_4V4P_0611/AA/2701:2706No text annotation
homologous
HL_7RQB_065
NA
HL_4V4P_0621/AA/2745:2759No text annotation
homologous
HL_7RQB_066
NA
HL_4V4P_0631/AA/2793:2803No text annotation
homologous
HL_7A0S_066
NA
HL_4V4P_0641/AA/2819:2827No text annotation
homologous
HL_7A0S_067
HL_37889.1
HL_4V4P_0651/AA/2856:2861GNRA
homologous
HL_7A0S_068
HL_34789.4
HL_4V4P_1191/AB/34:48No text annotation
homologous
HL_5J7L_215
NA
HL_4V4P_0671/AB/86:90GNRA
homologous
HL_7RQB_071
NA
HL_4V4P_1391/BA/12:22No text annotation
homologous
HL_4LFB_001
HL_73535.1
HL_4V4P_0691/BA/13:21No text annotation
HL_4V4P_1401/BA/80:89No text annotation
homologous
HL_4LFB_002
HL_46665.2
HL_4V4P_0711/BA/158:163GNRA
homologous
HL_6CZR_074
NA
HL_4V4P_0721/BA/190B:190GNo text annotation
homologous
HL_6CZR_075
NA
HL_4V4P_0731/BA/201:216Mini UNCG
homologous
HL_4LFB_005
HL_90436.3
HL_4V4P_0741/BA/259:267GNRA related
homologous
HL_4LFB_006
HL_87268.2
HL_4V4P_0751/BA/296:301GNRA
homologous
HL_4LFB_007
HL_34789.4
HL_4V4P_1221/BA/319:334No text annotation
HL_4V4P_0761/BA/320:333No text annotation
homologous
HL_6CZR_079
NA
HL_4V4P_0771/BA/342:347UNCG
homologous
HL_4LFB_009
HL_61337.3
HL_4V4P_0781/BA/379:384GNRA
homologous
HL_5J7L_010
NA
HL_4V4P_0791/BA/419:424UNCG
homologous
HL_5J7L_011
NA
HL_4V4P_0801/BA/458:474GNRA
homologous
HL_6CZR_083
NA
HL_4V4P_0811/BA/522:527No text annotation
geometric
HL_4WF9_003
HL_75660.7
HL_4V4P_0821/BA/617:623GNRA-like with tWH
homologous
HL_4LFB_014
HL_86621.1
HL_4V4P_0831/BA/689:698No text annotation
homologous
HL_5J7L_015
NA
HL_4V4P_0841/BA/726:731GNRA
homologous
HL_5J7L_016
NA
HL_4V4P_0851/BA/786:796No text annotation
homologous
HL_5J7L_017
NA
HL_4V4P_0861/BA/838:848Mini UNCG
homologous
HL_6CZR_089
NA
HL_4V4P_0871/BA/862:867GNRA
homologous
HL_4LFB_019
HL_34789.4
HL_4V4P_0881/BA/897:902GNRA
homologous
HL_5J7L_020
NA
HL_4V4P_0891/BA/963:972No text annotation
homologous
HL_4LFB_021
HL_97521.1
HL_4V4P_1411/BA/1012:1017GNRA
homologous
HL_4LFB_022
HL_34789.4
HL_4V4P_1251/BA/1030:1031No text annotation
homologous
HL_4LFB_023
NA
HL_4V4P_0911/BA/1076:1081GNRA
homologous
HL_4LFB_024
HL_34789.4
HL_4V4P_0921/BA/1089:1096T-loop related
homologous
HL_5J7L_024
NA
HL_4V4P_1261/BA/1133:1141No text annotation
HL_4V4P_0931/BA/1134:1140No text annotation
homologous
HL_6CZR_097
NA
HL_4V4P_1271/BA/1162:1174No text annotation
HL_4V4P_0941/BA/1165:1171GNRA
homologous
HL_4LFB_027
HL_34789.4
HL_4V4P_0951/BA/1265:1270GNRA
homologous
HL_4LFB_028
HL_34789.4
HL_4V4P_0961/BA/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_93658.1
HL_4V4P_0981/BA/1449:1454UNCG
homologous
HL_4LFB_031
HL_61337.3
HL_4V4P_0991/BA/1515:1520GNRA
geometric
HL_4LFB_032
HL_34789.4
HL_4V4P_1421/BB/31:39tRNA anticodon loop
homologous
HL_4V9Q_214
HL_81376.3
HL_4V4P_1031/BC/13:22No text annotation
homologous
HL_3KFU_004
NA
HL_4V4P_1041/BC/31:39tRNA anticodon loop
homologous
HL_4WT8_216
HL_81376.3
HL_4V4P_1051/BC/53:61No text annotation
homologous
HL_2AKE_003
NA

Problematic loops

#loop idProblemSequence
HL_4V4P_004No text annotation
HL_4V4P_006No text annotation
HL_4V4P_107No text annotation
HL_4V4P_012No text annotation
HL_4V4P_014No text annotation
HL_4V4P_016No text annotation
HL_4V4P_017GNRA
HL_4V4P_018No text annotation
HL_4V4P_020No text annotation
HL_4V4P_110No text annotation
HL_4V4P_025No text annotation
HL_4V4P_111No text annotation
HL_4V4P_035No text annotation
HL_4V4P_037Externally structured
HL_4V4P_114No text annotation
HL_4V4P_039No text annotation
HL_4V4P_044No text annotation
HL_4V4P_047No text annotation
HL_4V4P_115No text annotation
HL_4V4P_059No text annotation
HL_4V4P_066No text annotation
HL_4V4P_120No text annotation
HL_4V4P_068No text annotation
HL_4V4P_121No text annotation
HL_4V4P_070No text annotation
HL_4V4P_123No text annotation
HL_4V4P_124No text annotation
HL_4V4P_090No text annotation
HL_4V4P_097No text annotation
HL_4V4P_128No text annotation
HL_4V4P_100No text annotation
HL_4V4P_129No text annotation
HL_4V4P_101No text annotation
HL_4V4P_102T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V4P_1391/AA/25:30,
1/AA/510:515
No text annotation
geometric
IL_4LFB_055
IL_57885.2
IL_4V4P_0031/AA/36:37,
1/AA/442:444
Single bulged A
homologous
IL_7A0S_002
IL_14190.2
IL_4V4P_0041/AA/43:44,
1/AA/434:436
Minor groove platform
homologous
IL_5J7L_247
NA
IL_4V4P_1731/AA/81:85,
1/AA/97:105
Kink-turn
homologous
IL_7A0S_004
IL_94910.1
IL_4V4P_0061/AA/183:184,
1/AA/212:214
Single stack bend
homologous
IL_4WF9_007
IL_15011.2
IL_4V4P_1741/AA/239:245,
1/AA/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_9DFE_007
IL_02666.1
IL_4V4P_0081/AA/270F:270G,
1/AA/270R:270T
Single stack bend
geometric
IL_5J7L_249
NA
IL_4V4P_0091/AA/270G:270I,
1/AA/270Q:270R
Not an internal loop
geometric
IL_4UYK_002
NA
IL_4V4P_0101/AA/273:273C,
1/AA/363C:364
No text annotation
IL_4V4P_1411/AA/273:286,
1/AA/355:363
No text annotation
IL_4V4P_0111/AA/286:288,
1/AA/352:355
No text annotation
IL_4V4P_1421/AA/286:295,
1/AA/343:355
No text annotation
IL_4V4P_0121/AA/288:295,
1/AA/343:352
No text annotation
IL_4V4P_0131/AA/672:678,
1/AA/799:808
No text annotation
IL_4V4P_1441/AA/697:698,
1/AA/763:765
Single bulged A
homologous
IL_9DFE_017
IL_14190.2
IL_4V4P_0151/AA/702:703,
1/AA/728:730
Single bulged G
geometric
IL_4WF9_023
IL_28408.2
IL_4V4P_1751/AA/703:707,
1/AA/724:728
Triple sheared
homologous
IL_4WF9_024
IL_15190.2
IL_4V4P_0171/AA/736:741,
1/AA/756:760
No text annotation
IL_4V4P_0181/AA/844:848,
1/AA/930:934
No text annotation
IL_4V4P_0191/AA/848:850,
1/AA/928:930
Single stack bend
homologous
IL_5J7L_269
NA
IL_4V4P_0201/AA/858:862,
1/AA/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_7RQB_027
NA
IL_4V4P_0211/AA/862:863,
1/AA/913:915
Minor groove platform
homologous
IL_7A0S_028
IL_34520.3
IL_4V4P_0221/AA/864:868,
1/AA/909:912
C-loop
homologous
IL_7A0S_029
IL_16301.1
IL_4V4P_0231/AA/875:879,
1/AA/898:902
Double sheared with non-canonical cWW
homologous
IL_5J7L_274
NA
IL_4V4P_0241/AA/880:881,
1/AA/895:897
No text annotation
IL_4V4P_0251/AA/952:954,
1/AA/963:965
No text annotation
homologous
IL_7RQB_034
NA
IL_4V4P_1761/AA/992:996,
1/AA/1159:1162
No text annotation
IL_4V4P_0271/AA/998:1002,
1/AA/1153:1157
UAA/GAN
homologous
IL_7RQB_036
NA
IL_4V4P_0281/AA/1004:1013,
1/AA/1149:1151
Isolated non-canonical cWW pair
geometric
IL_8C3A_118
NA
IL_4V4P_1481/AA/1019:1034,
1/AA/1121:1143
No text annotation
IL_4V4P_0301/AA/1031:1034,
1/AA/1121:1123
Isolated non-canonical cWW pair
homologous
IL_7RQB_041
NA
IL_4V4P_1491/AA/1039:1051,
1/AA/1108:1116
No text annotation
IL_4V4P_0311/AA/1042:1051,
1/AA/1108:1113
No text annotation
IL_4V4P_1771/AA/1059:1062,
1/AA/1076:1079
No text annotation
IL_4V4P_1781/AA/1197:1198,
1/AA/1247:1249
No text annotation
IL_4V4P_0341/AA/1201:1208,
1/AA/1238:1244
No text annotation
IL_4V4P_1791/AA/1208:1215,
1/AA/1234:1238
Kink-turn
homologous
IL_9DFE_046
IL_90775.2
IL_4V4P_1511/AA/1219:1221,
1/AA/1228:1230
Intercalated cWW
homologous
IL_7A0S_044
IL_53541.1
IL_4V4P_0371/AA/1319:1323,
1/AA/1331:1333
C-loop
homologous
IL_7RQB_051
NA
IL_4V4P_0381/AA/1351:1355,
1/AA/1376:1380
UAA/GAN
homologous
IL_7RQB_052
NA
IL_4V4P_0391/AA/1357:1361,
1/AA/1370:1374
tSH-tHW-tHS
homologous
IL_7A0S_049
IL_05821.1
IL_4V4P_0401/AA/1415:1423,
1/AA/1574:1587
No text annotation
IL_4V4P_1521/AA/1415:1429,
1/AA/1564:1587
No text annotation
IL_4V4P_1531/AA/1433:1435,
1/AA/1557:1560
No text annotation
homologous
IL_7A0S_052
IL_38565.2
IL_4V4P_0421/AA/1436:1440,
1/AA/1551:1556
No text annotation
IL_4V4P_1541/AA/1474:1483,
1/AA/1506:1517
No text annotation
IL_4V4P_1801/AA/1489:1492,
1/AA/1498:1500
No text annotation
IL_4V4P_1551/AA/1650:1656,
1/AA/2004:2007
No text annotation
IL_4V4P_0451/AA/1651:1656,
1/AA/2004:2006
No text annotation
IL_4V4P_0461/AA/1662:1665,
1/AA/1995:1998
No text annotation
IL_4V4P_1811/AA/1666:1669,
1/AA/1993:1994
No text annotation
geometric
IL_8CRE_081
NA
IL_4V4P_1821/AA/1666:1674,
1/AA/1990:1994
No text annotation
geometric
IL_9DFE_066
IL_80252.1
IL_4V4P_1831/AA/1669:1674,
1/AA/1990:1993
Intercalated tWH
homologous
IL_7A0S_062
IL_28217.1
IL_4V4P_0471/AA/1684:1691,
1/AA/1696:1704
No text annotation
IL_4V4P_0481/AA/1770:1771,
1/AA/1980:1982
Single bulged A
homologous
IL_7A0S_064
IL_14190.2
IL_4V4P_0491/AA/1798:1804,
1/AA/1813:1821
Kink-turn related
homologous
IL_4WF9_069
IL_17069.6
IL_4V4P_0501/AA/1837:1840,
1/AA/1902:1903
Minor groove platform, major groove intercalation
homologous
IL_7RQB_071
NA
IL_4V4P_0511/AA/1841:1842,
1/AA/1898:1901
Major groove intercalation
homologous
IL_7A0S_067
IL_77710.1
IL_4V4P_0521/AA/1846:1849,
1/AA/1893:1894
Minor groove platform
homologous
IL_7RQB_073
NA
IL_4V4P_0531/AA/1851:1855,
1/AA/1887:1891
No text annotation
IL_4V4P_1581/AA/1851:1856,
1/AA/1886:1891
No text annotation
IL_4V4P_0541/AA/1856:1860,
1/AA/1882:1886
No text annotation
IL_4V4P_1591/AA/1856:1861,
1/AA/1881:1886
No text annotation
IL_4V4P_1601/AA/1933:1934,
1/AA/1964:1967
Bulged stacked bases
homologous
IL_5J7L_318
NA
IL_4V4P_0551/AA/1934:1945,
1/AA/1961:1964
No text annotation
homologous
IL_7A0S_072
IL_04332.3
IL_4V4P_0561/AA/2050:2052,
1/AA/2617:2618
Major groove platform
homologous
IL_7A0S_073
IL_48076.8
IL_4V4P_1841/AA/2054:2057,
1/AA/2611:2615
No text annotation
homologous
IL_9DFE_079
IL_70335.1
IL_4V4P_0581/AA/2067:2069,
1/AA/2442:2443
Single bulged U
homologous
IL_7A0S_075
IL_97561.3
IL_4V4P_0591/AA/2070:2071,
1/AA/2438:2441
Minor groove platform
homologous
IL_7A0S_076
IL_34520.3
IL_4V4P_0601/AA/2081:2083,
1/AA/2236:2239
Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA
IL_4V4P_0611/AA/2085:2087,
1/AA/2232:2234
No text annotation
homologous
IL_7RQB_083
NA
IL_4V4P_0621/AA/2108:2110,
1/AA/2179:2181
No text annotation
homologous
IL_9DFE_084
NA
IL_4V4P_0631/AA/2110:2120,
1/AA/2178:2179
Multiple bulged bases
geometric
IL_3IGI_013
IL_44609.2
IL_4V4P_1631/AA/2350:2353,
1/AA/2364:2367
No text annotation
IL_4V4P_0651/AA/2401:2403,
1/AA/2414:2415
Single bulged C
geometric
IL_1KUQ_002
IL_05642.2
IL_4V4P_0661/AA/2453:2454,
1/AA/2498:2500
Single stack bend
geometric
IL_7RQB_091
NA
IL_4V4P_0671/AA/2454:2455,
1/AA/2496:2498
Major groove platform
homologous
IL_7RQB_092
NA
IL_4V4P_0681/AA/2457:2461,
1/AA/2489:2494
No text annotation
IL_4V4P_0691/AA/2466:2470,
1/AA/2480:2484
Triple sheared
homologous
IL_7RQB_095
NA
IL_4V4P_1641/AA/2510:2512,
1/AA/2574:2578
Isolated non-canonical cWW with bulges
homologous
IL_9DFE_097
IL_68118.3
IL_4V4P_0711/AA/2512:2513,
1/AA/2571:2574
No text annotation
geometric
IL_5J7L_341
NA
IL_4V4P_0721/AA/2521:2522,
1/AA/2541:2544
Major groove platform with intercalation
homologous
IL_5J7L_342
NA
IL_4V4P_0731/AA/2591:2592,
1/AA/2601:2603
Single bulged A
homologous
IL_7RQB_101
NA
IL_4V4P_0741/AA/2636:2640,
1/AA/2774:2782
tSH-tHS-tHW
homologous
IL_7RQB_102
NA
IL_4V4P_0751/AA/2680:2684,
1/AA/2725:2727
C-loop
homologous
IL_4WF9_101
IL_63596.12
IL_4V4P_1851/AA/2687:2691,
1/AA/2718:2722
UAA/GAN related, with intercalation
homologous
IL_9DFE_104
IL_82016.1
IL_4V4P_0781/AA/2737:2742,
1/AA/2762:2767
UAA/GAN with extra cWW
homologous
IL_7RQB_107
NA
IL_4V4P_0791/AA/2838:2839,
1/AA/2878:2880
Single bulged C
homologous
IL_7RQB_108
NA
IL_4V4P_0801/AA/2843:2846,
1/AA/2870:2874
No text annotation
geometric
IL_7RQB_109
NA
IL_4V4P_1651/AA/2843:2852,
1/AA/2865:2874
No text annotation
IL_4V4P_0811/AA/2846:2852,
1/AA/2865:2870
No text annotation
IL_4V4P_0821/AB/23:28,
1/AB/56:60
No text annotation
homologous
IL_7RQB_112
NA
IL_4V4P_0831/AB/30:31,
1/AB/51:54
Minor groove platform, major groove intercalation
geometric
IL_1U9S_005
IL_55206.1
IL_4V4P_0861/BA/44:46,
1/BA/395:398
Isolated non-canonical cWW pair
geometric
IL_4V88_424
NA
IL_4V4P_0871/BA/47:52,
1/BA/359:361
No text annotation
homologous
IL_5J7L_003
NA
IL_4V4P_0881/BA/54:56,
1/BA/356:357
Minor groove platform
homologous
IL_4LFB_004
IL_34520.3
IL_4V4P_0891/BA/63:66,
1/BA/103:104
Multiple bulged bases
homologous
IL_5J7L_005
NA
IL_4V4P_0901/BA/67:69,
1/BA/99:102
Isolated non-canonical cWW pair
homologous
IL_4LFB_006
IL_01003.3
IL_4V4P_0911/BA/129:136,
1/BA/227:232
No text annotation
IL_4V4P_0921/BA/148:153,
1/BA/168:174
tWH-tWH-tHW-tHW
homologous
IL_4LFB_009
IL_00680.1
IL_4V4P_0931/BA/186:188,
1/BA/190K:191
Isolated non-canonical cWW pair
homologous
IL_4LFB_010
IL_01003.3
IL_4V4P_0941/BA/242:247,
1/BA/277:284
Kink-turn with non-sequential stacking
homologous
IL_6CZR_123
NA
IL_4V4P_0951/BA/249:252,
1/BA/274:275
No text annotation
homologous
IL_4LFB_012
IL_22002.1
IL_4V4P_1861/BA/291:293,
1/BA/304:309
No text annotation
IL_4V4P_0961/BA/292:293,
1/BA/304:308
C-loop
homologous
IL_6CZR_125
NA
IL_4V4P_0971/BA/367:369,
1/BA/392:393
Single bulged U
geometric
IL_5J7L_017
NA
IL_4V4P_1681/BA/370:375,
1/BA/389:391
No text annotation
IL_4V4P_0981/BA/371:375,
1/BA/389:390
C-loop
homologous
IL_6CZR_127
NA
IL_4V4P_0991/BA/375:376,
1/BA/387:389
Single bulged G
geometric
IL_5J7L_019
NA
IL_4V4P_1001/BA/409:416,
1/BA/427:433
No text annotation
homologous
IL_4LFB_017
IL_62329.1
IL_4V4P_1011/BA/446:450,
1/BA/483:488
6x5 Sarcin-Ricin; G-bulge
homologous
IL_6CZR_130
NA
IL_4V4P_1021/BA/450:455,
1/BA/477:483
No text annotation
homologous
IL_6CZR_406
NA
IL_4V4P_1031/BA/504:511,
1/BA/540:541
SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_11411.1
IL_4V4P_1041/BA/515:521,
1/BA/528:536
Kink-turn related
geometric
IL_4V88_415
NA
IL_4V4P_1051/BA/580:584,
1/BA/757:761
tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_4V4P_1061/BA/594:596,
1/BA/644:645
Major groove platform
homologous
IL_4LFB_024
IL_48076.8
IL_4V4P_1071/BA/597:598,
1/BA/640:643
Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_73108.2
IL_4V4P_1081/BA/605:612,
1/BA/628:633
No text annotation
homologous
IL_4LFB_026
IL_04211.1
IL_4V4P_1091/BA/654:655,
1/BA/751:754
Major groove platform; stack outside cWW
geometric
IL_1G1X_004
NA
IL_4V4P_1101/BA/657:658,
1/BA/747:749
Major groove platform
homologous
IL_4LFB_028
IL_48076.8
IL_4V4P_1111/BA/662:666,
1/BA/740:743
Tandem non-canonical cWW pairs
homologous
IL_4LFB_029
IL_15225.2
IL_4V4P_1121/BA/673:677,
1/BA/713:717
Triple non-canonical cWW pairs
homologous
IL_5J7L_361
NA
IL_4V4P_1131/BA/683:688,
1/BA/699:707
Kink-turn
homologous
IL_4LFB_031
IL_95727.1
IL_4V4P_1141/BA/774:778,
1/BA/804:805
Left turn
homologous
IL_5J7L_036
NA
IL_4V4P_1151/BA/779:783,
1/BA/799:803
tSH-tHW-tHS
homologous
IL_5J7L_037
NA
IL_4V4P_1161/BA/887:894,
1/BA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
NA
IL_4V4P_1171/BA/922:923,
1/BA/1393:1395
Single bulged A
homologous
IL_4LFB_035
IL_14190.2
IL_4V4P_1181/BA/925:927,
1/BA/1390:1391
Single bulged G
homologous
IL_4LFB_036
IL_28408.2
IL_4V4P_1191/BA/933:935,
1/BA/1380:1384
Minor groove platform
homologous
IL_5J7L_041
NA
IL_4V4P_1201/BA/953:954,
1/BA/1226:1228
Minor groove platform
homologous
IL_4LFB_038
IL_34520.3
IL_4V4P_1211/BA/1025:1027,
1/BA/1034:1036
Isolated non-canonical cWW pair
geometric
IL_3DIL_006
IL_01003.3
IL_4V4P_1221/BA/1048:1050,
1/BA/1208:1209
Single bulged U
homologous
IL_4LFB_042
IL_97561.3
IL_4V4P_1231/BA/1052:1056,
1/BA/1204:1206
Isolated cWS basepair
homologous
IL_4LFB_044
IL_82453.1
IL_4V4P_1241/BA/1057:1058,
1/BA/1199:1203
Minor groove platform
homologous
IL_4LFB_045
IL_24264.1
IL_4V4P_1251/BA/1060:1061,
1/BA/1195:1197
Single bulged U
geometric
IL_2PN3_003
IL_97561.3
IL_4V4P_1261/BA/1061:1063,
1/BA/1193:1195
Isolated non-canonical cWW pair
homologous
IL_4LFB_047
IL_68118.3
IL_4V4P_1271/BA/1124:1132,
1/BA/1142:1149
No text annotation
IL_4V4P_1281/BA/1247:1253,
1/BA/1284:1290
No text annotation
homologous
IL_6CZR_160
NA
IL_4V4P_1291/BA/1255:1258,
1/BA/1277:1282
180 degree turn
homologous
IL_4LFB_052
IL_08849.1
IL_4V4P_1301/BA/1259:1262,
1/BA/1273:1276
Double sheared
geometric
IL_5J7L_256
NA
IL_4V4P_1311/BA/1303:1308,
1/BA/1329:1334
No text annotation
geometric
IL_4LFB_055
IL_57885.2
IL_4V4P_1321/BA/1401:1404,
1/BA/1497:1501
No text annotation
geometric
IL_4V88_464
NA
IL_4V4P_1331/BA/1405:1409,
1/BA/1491:1496
No text annotation
homologous
IL_5J7L_060
NA
IL_4V4P_1341/BA/1412:1414,
1/BA/1486:1488
Isolated non-canonical cWW pair
homologous
IL_4LFB_059
IL_01003.3
IL_4V4P_1351/BA/1416:1420,
1/BA/1480:1484
No text annotation
IL_4V4P_1871/BA/1431:1435,
1/BA/1466:1469
UAA/GAN variation
homologous
IL_4LFB_062
IL_77691.7
IL_4V4P_1371/BA/1435:1437,
1/BA/1464:1466
Isolated non-canonical cWW pair
homologous
IL_6CZR_171
NA
IL_4V4P_1381/BA/1440:1447,
1/BA/1459:1461
No text annotation
homologous
IL_4LFB_064
IL_34117.1

Problematic loops

#loop idProblemSequence
IL_4V4P_001Triple sheared with non-canonical cWW
IL_4V4P_002No text annotation
IL_4V4P_005No text annotation
IL_4V4P_0078x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
IL_4V4P_140No text annotation
IL_4V4P_143No text annotation
IL_4V4P_014Isolated non-canonical cWW pair
IL_4V4P_016Triple sheared with non-canonical cWW
IL_4V4P_145No text annotation
IL_4V4P_026No text annotation
IL_4V4P_146No text annotation
IL_4V4P_147Tandem non-canonical cWW pairs
IL_4V4P_029No text annotation
IL_4V4P_150No text annotation
IL_4V4P_032No text annotation
IL_4V4P_033Isolated cWS basepair
IL_4V4P_035No text annotation
IL_4V4P_036No text annotation
IL_4V4P_041Tandem non-canonical cWW pairs
IL_4V4P_043Decoding loop related
IL_4V4P_044No text annotation
IL_4V4P_156No text annotation
IL_4V4P_157No text annotation
IL_4V4P_161No text annotation
IL_4V4P_057No text annotation
IL_4V4P_162Tandem non-canonical cWW pairs
IL_4V4P_064Double sheared with non-canonical cWW
IL_4V4P_070Tandem non-canonical cWW pairs
IL_4V4P_076No text annotation
IL_4V4P_077Multiple bulged bases
IL_4V4P_166No text annotation
IL_4V4P_084No text annotation
IL_4V4P_085Single bulged G
IL_4V4P_167No text annotation
IL_4V4P_169Single bulged G, near cWW
IL_4V4P_170No text annotation
IL_4V4P_171Other IL
IL_4V4P_172Isolated non-canonical cWW pair
IL_4V4P_136Triple sheared related

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V4P_0231/AA/30:31,
1/AA/474:484,
1/AA/496:510
No text annotation
homologous
J3_4WF9_011
J3_17917.1
J3_4V4P_0241/AA/32:35,
1/AA/445:461,
1/AA/468:473
No text annotation
homologous
J3_9DFE_003
J3_07616.1
J3_4V4P_0011/AA/56:57,
1/AA/70:76,
1/AA/110:114
No text annotation
homologous
J3_7A0S_002
J3_01004.1
J3_4V4P_0371/AA/683:687,
1/AA/775:777,
1/AA/787:794
No text annotation
J3_4V4P_0031/AA/698:700,
1/AA/732:736,
1/AA/760:763
No text annotation
geometric
J3_5J7L_039
NA
J3_4V4P_0251/AA/698:700,
1/AA/732:741,
1/AA/756:763
No text annotation
J3_4V4P_0041/AA/1055:1057,
1/AA/1081:1091,
1/AA/1100:1104
No text annotation
J3_4V4P_0051/AA/1298:1303,
1/AA/1625:1627,
1/AA/1639:1642
No text annotation
homologous
J3_7A0S_006
J3_32852.7
J3_4V4P_0061/AA/1306:1310,
1/AA/1604:1611,
1/AA/1620:1622
No text annotation
J3_4V4P_0381/AA/1344:1350,
1/AA/1381:1385,
1/AA/1402:1403
No text annotation
homologous
J3_9DFE_012
J3_94309.1
J3_4V4P_0281/AA/1444:1445,
1/AA/1466:1473,
1/AA/1518:1547
No text annotation
J3_4V4P_0071/AA/2090:2093,
1/AA/2196:2205,
1/AA/2219:2229
Kink-turn 3-way junction
homologous
J3_5J7L_044
NA
J3_4V4P_0081/AA/2295:2299,
1/AA/2317:2323,
1/AA/2332:2337
No text annotation
J3_4V4P_0091/AA/2517:2520,
1/AA/2545:2547,
1/AA/2561:2567
No text annotation
homologous
J3_7RQB_012
NA
J3_4V4P_0101/AA/2814:2815,
1/AA/2831:2836,
1/AA/2882:2886
No text annotation
homologous
J3_9DFE_019
J3_76911.2
J3_4V4P_0301/AB/11:18,
1/AB/65:79,
1/AB/97:109
No text annotation
J3_4V4P_0391/BA/3A:1006,
1/BA/1023:1025,
1/BA/1036:1037
No text annotation
J3_4V4P_0311/BA/46:52,
1/BA/359:367,
1/BA/393:395
No text annotation
homologous
J3_4LFB_014
J3_63856.1
J3_4V4P_0121/BA/586:588,
1/BA/651:654,
1/BA/754:755
No text annotation
geometric
J3_6CZR_016
NA
J3_4V4P_0321/BA/586:588,
1/BA/651:655,
1/BA/751:755
No text annotation
homologous
J3_4LFB_015
J3_17385.5
J3_4V4P_0131/BA/672:673,
1/BA/717:725,
1/BA/732:734
No text annotation
homologous
J3_6CZR_017
NA
J3_4V4P_0141/BA/826:829,
1/BA/857:861,
1/BA/868:874
No text annotation
homologous
J3_4LFB_001
J3_02285.1
J3_4V4P_0331/BA/936:939,
1/BA/1344:1350,
1/BA/1372:1379
No text annotation
homologous
J3_5J7L_052
NA
J3_4V4P_0151/BA/943:946,
1/BA/1235:1237,
1/BA/1337:1340
No text annotation
homologous
J3_5J7L_005
NA
J3_4V4P_0161/BA/955:962,
1/BA/973:984,
1/BA/1221:1225
No text annotation
geometric
J3_4LFB_004
J3_88451.1
J3_4V4P_0341/BA/955:962,
1/BA/973:986,
1/BA/1219:1225
No text annotation
J3_4V4P_0351/BA/990:997,
1/BA/1044:1047,
1/BA/1210:1215
No text annotation
homologous
J3_4LFB_016
J3_28881.1
J3_4V4P_0191/BA/1064:1068,
1/BA/1107:1113,
1/BA/1187:1192
No text annotation
J3_4V4P_0401/BA/1073:1074,
1/BA/1083:1086,
1/BA/1099:1102
No text annotation
homologous
J3_4LFB_017
J3_11018.1
J3_4V4P_0411/BA/1116:1118,
1/BA/1155:1161,
1/BA/1175:1184
No text annotation
homologous
J3_4LFB_018
J3_40706.1
J3_4V4P_0361/BA/1237:1241,
1/BA/1296:1303,
1/BA/1334:1337
No text annotation
homologous
J3_4LFB_009
J3_03192.1
J4_4V4P_0011/AA/297:301,
1/AA/316:319,
1/AA/323:325,
1/AA/337:341
No text annotation
J4_4V4P_0121/AA/1270:1276,
1/AA/1294:1295,
1/AA/1645:1648,
1/AA/2009:2010
No text annotation
homologous
J4_9DFE_003
J4_64571.6
J4_4V4P_0131/AA/1674:1683,
1/AA/1705:1707,
1/AA/1751:1764,
1/AA/1988:1990
No text annotation
J4_4V4P_0141/AA/1772:1776,
1/AA/1788:1792,
1/AA/1827:1830,
1/AA/1975:1979
No text annotation
homologous
J4_9DFE_007
J4_61477.6
J4_4V4P_0041/AA/1833:1835,
1/AA/1905:1906,
1/AA/1924:1933,
1/AA/1967:1972
No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_4V4P_0151/AA/2285:2289,
1/AA/2343:2347,
1/AA/2370:2372,
1/AA/2381:2383
No text annotation
homologous
J4_7A0S_009
J4_98139.1
J4_4V4P_0061/AA/2643:2646,
1/AA/2674:2676,
1/AA/2731:2735,
1/AA/2769:2771
No text annotation
homologous
J4_9DFE_010
J4_77044.5
J4_4V4P_0071/BA/115:122,
1/BA/239:240,
1/BA/286:289,
1/BA/311:312
No text annotation
homologous
J4_4LFB_001
J4_90044.1
J4_4V4P_0081/BA/142:145,
1/BA/177:183,
1/BA/194:198,
1/BA/219:221
No text annotation
J4_4V4P_0091/BA/569:577,
1/BA/764:769,
1/BA/810:821,
1/BA/879:881
No text annotation
J4_4V4P_0171/BC/7:10,
1/BC/25:27,
1/BC/43:49,
1/BC/65:66
tRNA junction
homologous
J4_6JXM_001
J4_95067.1
J5_4V4P_0071/AA/268:270C,
1/AA/270W:272,
1/AA/365:375,
1/AA/399:406,
1/AA/421:424
No text annotation
J5_4V4P_0021/AA/584:590,
1/AA/667:671,
1/AA/809:812,
1/AA/1195:1196,
1/AA/1250:1256
No text annotation
J5_4V4P_0031/AA/1306:1314,
1/AA/1338:1343,
1/AA/1404:1405,
1/AA/1597:1611,
1/AA/1620:1622
No text annotation
J5_4V4P_0081/AA/2057:2064,
1/AA/2446:2453,
1/AA/2500:2508,
1/AA/2580:2588,
1/AA/2606:2611
No text annotation
J5_4V4P_0051/BA/36:39,
1/BA/403:406,
1/BA/436:442,
1/BA/492:500,
1/BA/545:548
No text annotation
homologous
J5_4LFB_001
J5_70703.1
J5_4V4P_0091/BA/58:61,
1/BA/106:113,
1/BA/314:316,
1/BA/337:339,
1/BA/350:354
No text annotation
homologous
J5_4LFB_002
J5_58574.1
J6_4V4P_0011/AA/2074:2077,
1/AA/2243:2246,
1/AA/2258:2259,
1/AA/2281:2284,
1/AA/2384:2395,
1/AA/2421:2435
No text annotation
J7_4V4P_0021/AA/817:822,
1/AA/835:838,
1/AA/940:946,
1/AA/971:976,
1/AA/987:991,
1/AA/1163:1164,
1/AA/1185:1190
No text annotation
J8_4V4P_0011/AA/45:54,
1/AA/116:121,
1/AA/130:131,
1/AA/148:183,
1/AA/214:224,
1/AA/231:235,
1/AA/262:266,
1/AA/426:433
No text annotation
J9_4V4P_0011/AA/8:15,
1/AA/525:534,
1/AA/559:579,
1/AA/1261:1269,
1/AA/2011:2023,
1/AA/2040:2043,
1/AA/2625:2630,
1/AA/2788:2811,
1/AA/2889:2895
No text annotation
J11_4V4P_0011/AA/8:17,
1/AA/523:534,
1/AA/559:579,
1/AA/1261:1276,
1/AA/1294:1295,
1/AA/1645:1648,
1/AA/2009:2024,
1/AA/2039:2043,
1/AA/2625:2630,
1/AA/2788:2811,
1/AA/2889:2895
No text annotation

Problematic loops

#loop idProblemSequence
J3_4V4P_002No text annotation
J3_4V4P_026No text annotation
J3_4V4P_027No text annotation
J3_4V4P_029No text annotation
J3_4V4P_011No text annotation
J3_4V4P_017No text annotation
J3_4V4P_018No text annotation
J3_4V4P_020No text annotation
J3_4V4P_021No text annotation
J3_4V4P_022No text annotation
J4_4V4P_002No text annotation
J4_4V4P_003No text annotation
J4_4V4P_005No text annotation
J4_4V4P_010No text annotation
J4_4V4P_016tRNA junction
J4_4V4P_011No text annotation
J5_4V4P_001No text annotation
J5_4V4P_004No text annotation
J5_4V4P_006No text annotation
J7_4V4P_001No text annotation

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