HL_4V4P_007

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4P_007 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.3324

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

4V4P|1|AA|C|246
4V4P|1|AA|G|247
4V4P|1|AA|G|248
4V4P|1|AA|C|249
4V4P|1|AA|G|250
4V4P|1|AA|A|251
4V4P|1|AA|G|252

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L31

Chain A8

50S ribosomal protein L35

Chain AO

50S ribosomal protein L15