HL_4V4P_011

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

4V4P|1|AA|G|329, 4V4P|1|AA|A|330, 4V4P|1|AA|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4P_011 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.3633

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

4V4P|1|AA|G|327
4V4P|1|AA|U|328
4V4P|1|AA|G|329
4V4P|1|AA|A|330
4V4P|1|AA|A|331
4V4P|1|AA|A|332
4V4P|1|AA|G|333
4V4P|1|AA|C|334
4V4P|1|AA|C|335

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AU

50S ribosomal protein L24