HL_4V4P_012

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

4V4P|1|AA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4P_012 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.454

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V4P|1|AA|G|382
4V4P|1|AA|U|383
4V4P|1|AA|U|384
4V4P|1|AA|C|385
4V4P|1|AA|G|386
4V4P|1|AA|U|387
4V4P|1|AA|G|388
4V4P|1|AA|G|389
4V4P|1|AA|A|390
4V4P|1|AA|G|391
4V4P|1|AA|C|392

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L31

Chain A8

50S ribosomal protein L35

Chain AO

50S ribosomal protein L15