HL_4V4P_024

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4P_024 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.573

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V4P|1|AA|G|978
4V4P|1|AA|G|979
4V4P|1|AA|A|980
4V4P|1|AA|A|981
4V4P|1|AA|C|982
4V4P|1|AA|A|983
4V4P|1|AA|A|984
4V4P|1|AA|C|985

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L20