HL_4V4P_033

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

4V4P|1|AA|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4P_033 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.5912

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V4P|1|AA|C|1450
4V4P|1|AA|C|1451
4V4P|1|AA|A|1453
4V4P|1|AA|U|1454
4V4P|1|AA|G|1455
4V4P|1|AA|G|1456
4V4P|1|AA|A|1457
4V4P|1|AA|C|1458
4V4P|1|AA|G|1459
4V4P|1|AA|A|1460
4V4P|1|AA|G|1461

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A0

50S ribosomal protein L17