HL_4V4P_049

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V4P|1|AA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4P_049 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.2141

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V4P|1|AA|C|2248
4V4P|1|AA|U|2249
4V4P|1|AA|G|2250
4V4P|1|AA|G|2251
4V4P|1|AA|G|2252
4V4P|1|AA|G|2253
4V4P|1|AA|C|2254
4V4P|1|AA|G|2255
4V4P|1|AA|G|2256

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L27

Chain AP

50S ribosomal protein L16

Chain BC

Transfer RNA; tRNA