HL_4V4P_075

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4P_075 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.2378

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

4V4P|1|BA|U|296
4V4P|1|BA|G|297
4V4P|1|BA|A|298
4V4P|1|BA|G|299
4V4P|1|BA|A|300
4V4P|1|BA|G|301

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BH

30S ribosomal protein S5

Chain BO

30S ribosomal protein S12

Chain BT

30S ribosomal protein S17