HL_4V4P_080

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

4V4P|1|BA|C|461

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4P_080 not in the Motif Atlas

Homologous match to HL_6CZR_083

Geometric discrepancy: 0.2248

The information below is about HL_6CZR_083

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V4P|1|BA|C|458
4V4P|1|BA|G|459
4V4P|1|BA|A|460
4V4P|1|BA|C|461
4V4P|1|BA|G|462
4V4P|1|BA|A|463
4V4P|1|BA|G|474

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BS

30S ribosomal protein S16