HL_4V4P_105

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GUUCGAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4P_105 not in the Motif Atlas

Homologous match to HL_2AKE_003

Geometric discrepancy: 0.3951

The information below is about HL_2AKE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33239.1

Basepair signature

cWW-R-R-tWH-R-R-R

Number of instances in this motif group

98

Unit IDs

4V4P|1|BC|G|53
4V4P|1|BC|U|54
4V4P|1|BC|U|55
4V4P|1|BC|C|56
4V4P|1|BC|G|57
4V4P|1|BC|A|58
4V4P|1|BC|U|59
4V4P|1|BC|C|60
4V4P|1|BC|C|61

Current chains

Chain BC

tRNA Phe (unmodified bases)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AG

50S ribosomal protein L5