HL_4V4P_107

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GUUGGGAAGC

Length

10 nucleotides

Bulged bases

4V4P|1|AA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4P_107 not in the Motif Atlas

Geometric match to HL_8P9A_222

Geometric discrepancy: 0.3554

The information below is about HL_8P9A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

4V4P|1|AA|G|304
4V4P|1|AA|U|305
4V4P|1|AA|U|306
4V4P|1|AA|G|307
4V4P|1|AA|G|308
4V4P|1|AA|G|309
4V4P|1|AA|A|310
4V4P|1|AA|A|311
4V4P|1|AA|G|312
4V4P|1|AA|C|313

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AU

50S ribosomal protein L24