HL_4V4P_109

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4P_109 not in the Motif Atlas

Homologous match to HL_7A0S_015

Geometric discrepancy: 0.3311

The information below is about HL_7A0S_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

4V4P|1|AA|C|462
4V4P|1|AA|G|463
4V4P|1|AA|U|464
4V4P|1|AA|G|465
4V4P|1|AA|A|466
4V4P|1|AA|G|467

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A7

50S ribosomal protein L34

Chain AF

50S ribosomal protein L4

Chain AS

50S ribosomal protein L22