HL_4V4P_116
3D structure
- PDB id
- 4V4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of 70S ribosome with thrS operator and tRNAs.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.5 Å
Loop
- Sequence
- GCGCAAGGGU
- Length
- 10 nucleotides
- Bulged bases
- 4V4P|1|AA|G|2325, 4V4P|1|AA|C|2326
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4P_116 not in the Motif Atlas
- Geometric match to HL_2JLT_001
- Geometric discrepancy: 0.3877
- The information below is about HL_2JLT_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14856.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V4P|1|AA|G|2323
4V4P|1|AA|C|2324
4V4P|1|AA|G|2325
4V4P|1|AA|C|2326
4V4P|1|AA|A|2327
4V4P|1|AA|A|2328
4V4P|1|AA|G|2329
4V4P|1|AA|G|2330
4V4P|1|AA|G|2331
4V4P|1|AA|U|2332
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain A3
- 50S ribosomal protein L27
- Chain A6
- 50S ribosomal protein L33
- Chain AP
- 50S ribosomal protein L16
- Chain AQ
- 50S ribosomal protein L18
- Chain BC
- Transfer RNA; tRNA
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