HL_4V4P_124

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GCGAAGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4P_124 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2759

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V4P|1|BA|G|725
4V4P|1|BA|C|726
4V4P|1|BA|G|727
4V4P|1|BA|A|728
4V4P|1|BA|A|729
4V4P|1|BA|G|730
4V4P|1|BA|G|731
4V4P|1|BA|C|732

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BR

30S ribosomal protein S15

Chain BU

30S ribosomal protein S18