HL_4V4Q_081

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

4V4Q|1|BB|C|1870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Q_081 not in the Motif Atlas

Homologous match to HL_5J7L_180

Geometric discrepancy: 0.3839

The information below is about HL_5J7L_180

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V4Q|1|BB|C|1868
4V4Q|1|BB|G|1869
4V4Q|1|BB|C|1870
4V4Q|1|BB|A|1871
4V4Q|1|BB|A|1872
4V4Q|1|BB|G|1873

Current chains

Chain BB

23S ribosomal RNA

Nearby chains