HL_4V4Q_085

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

4V4Q|1|BB|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Q_085 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3552

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V4Q|1|BB|A|2142
4V4Q|1|BB|C|2143
4V4Q|1|BB|G|2144
4V4Q|1|BB|C|2145
4V4Q|1|BB|C|2146
4V4Q|1|BB|A|2147
4V4Q|1|BB|G|2148
4V4Q|1|BB|U|2149

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain CA

Small subunit ribosomal RNA; SSU rRNA