HL_4V4Q_088

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

4V4Q|1|BB|A|2268, 4V4Q|1|BB|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Q_088 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.2129

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4V4Q|1|BB|C|2264
4V4Q|1|BB|U|2265
4V4Q|1|BB|A|2266
4V4Q|1|BB|A|2267
4V4Q|1|BB|A|2268
4V4Q|1|BB|G|2269
4V4Q|1|BB|A|2270
4V4Q|1|BB|G|2271
4V4Q|1|BB|U|2272
4V4Q|1|BB|A|2273
4V4Q|1|BB|A|2274
4V4Q|1|BB|C|2275
4V4Q|1|BB|G|2276

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BM

50S ribosomal protein L16

Chain BW

50S ribosomal protein L27