HL_4V4Q_101

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

UUUAA

Length

5 nucleotides

Bulged bases

4V4Q|1|BB|U|2797, 4V4Q|1|BB|A|2799

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Q_101 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2441

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V4Q|1|BB|U|2796
4V4Q|1|BB|U|2797
4V4Q|1|BB|U|2798
4V4Q|1|BB|A|2799
4V4Q|1|BB|A|2800

Current chains

Chain BB

23S ribosomal RNA

Nearby chains