HL_4V4Q_157

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

4V4Q|1|DB|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Q_157 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.4988

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V4Q|1|DB|U|641
4V4Q|1|DB|U|642
4V4Q|1|DB|A|643
4V4Q|1|DB|A|644
4V4Q|1|DB|C|645
4V4Q|1|DB|U|646
4V4Q|1|DB|G|647

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L33

Chain D3

50S ribosomal protein L35