3D structure

PDB id
4V4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3.46 Å

Loop

Sequence
UGCUAACG
Length
8 nucleotides
Bulged bases
4V4Q|1|DB|U|958, 4V4Q|1|DB|C|961
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V4Q_163 not in the Motif Atlas
Homologous match to HL_4WF9_027
Geometric discrepancy: 0.1434
The information below is about HL_4WF9_027
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_34789.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
397

Unit IDs

4V4Q|1|DB|U|955
4V4Q|1|DB|G|956
4V4Q|1|DB|C|957
4V4Q|1|DB|U|958
4V4Q|1|DB|A|959
4V4Q|1|DB|A|960
4V4Q|1|DB|C|961
4V4Q|1|DB|G|962

Current chains

Chain DB
23S ribosomal RNA

Nearby chains

Chain DA
5S ribosomal RNA; 5S rRNA
Chain DM
50S ribosomal protein L16

Coloring options:


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