HL_4V4R_112

3D structure

PDB id

4V4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.9 Å

Loop

Sequence

GAGAAAUC

Length

8 nucleotides

Bulged bases

4V4R|1|BA|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4R_112 not in the Motif Atlas

Homologous match to HL_5J7L_140

Geometric discrepancy: 0.5888

The information below is about HL_5J7L_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_62934.1

Basepair signature

cWW-tSH-F

Number of instances in this motif group

2

Unit IDs

4V4R|1|BA|G|224
4V4R|1|BA|A|225
4V4R|1|BA|G|226
4V4R|1|BA|A|227
4V4R|1|BA|A|228
4V4R|1|BA|A|229
4V4R|1|BA|U|230
4V4R|1|BA|C|231

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BP

50S ribosomal protein L15