HL_4V4S_008

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4S_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1707

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V4S|1|AA|C|320
4V4S|1|AA|A|321
4V4S|1|AA|C|322
4V4S|1|AA|U|323
4V4S|1|AA|G|324
4V4S|1|AA|A|325
4V4S|1|AA|G|326
4V4S|1|AA|A|327
4V4S|1|AA|C|328
4V4S|1|AA|A|329
4V4S|1|AA|C|330
4V4S|1|AA|G|331
4V4S|1|AA|G|332
4V4S|1|AA|G|333

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AT

30S ribosomal protein S20