Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V4S_0011/AA/10:24No text annotation
HL_4V4S_0031/AA/158:163GNRA
homologous
HL_4LFB_003
HL_37824.7
HL_4V4S_0041/AA/190B:190GNo text annotation
homologous
HL_4LFB_004
HL_48417.5
HL_4V4S_0051/AA/201:216Mini UNCG
homologous
HL_4LFB_005
HL_48778.2
HL_4V4S_0061/AA/259:267GNRA related
homologous
HL_4LFB_006
HL_84299.4
HL_4V4S_0071/AA/296:301GNRA
homologous
HL_6CZR_078
NA
HL_4V4S_0081/AA/320:333No text annotation
homologous
HL_6CZR_079
NA
HL_4V4S_0091/AA/342:347UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_4V4S_1251/AA/378:385tRNA anticodon loop
geometric
HL_3RG5_006
HL_04259.3
HL_4V4S_0101/AA/379:384GNRA
homologous
HL_5J7L_010
HL_37824.7
HL_4V4S_0111/AA/419:424UNCG
homologous
HL_5J7L_011
HL_34617.5
HL_4V4S_0121/AA/458:474GNRA
homologous
HL_4LFB_012
HL_37824.7
HL_4V4S_0131/AA/522:527No text annotation
geometric
HL_4WF9_011
HL_75660.5
HL_4V4S_0141/AA/617:623No text annotation
homologous
HL_5J7L_014
HL_10453.3
HL_4V4S_0151/AA/689:698No text annotation
homologous
HL_4LFB_015
HL_75293.5
HL_4V4S_0161/AA/726:731GNRA
homologous
HL_5J7L_016
HL_37824.7
HL_4V4S_0171/AA/786:796No text annotation
homologous
HL_5J7L_017
HL_75293.5
HL_4V4S_0181/AA/838:848Mini UNCG
homologous
HL_6CZR_089
NA
HL_4V4S_0191/AA/862:867GNRA
homologous
HL_4LFB_019
HL_37824.7
HL_4V4S_0201/AA/897:902GNRA
homologous
HL_4LFB_020
HL_37824.7
HL_4V4S_0211/AA/963:972No text annotation
homologous
HL_5J7L_021
HL_50779.4
HL_4V4S_1081/AA/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.7
HL_4V4S_0231/AA/1076:1081GNRA
homologous
HL_4LFB_024
HL_37824.7
HL_4V4S_0241/AA/1089:1096T-loop related
homologous
HL_6CZR_096
NA
HL_4V4S_0251/AA/1134:1140No text annotation
homologous
HL_6CZR_097
NA
HL_4V4S_0261/AA/1165:1171GNRA
homologous
HL_4LFB_027
HL_37824.7
HL_4V4S_0271/AA/1265:1270No text annotation
homologous
HL_6CZR_099
NA
HL_4V4S_0281/AA/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.3
HL_4V4S_0301/AA/1449:1454UNCG
homologous
HL_4LFB_031
HL_34617.5
HL_4V4S_0311/AA/1515:1520GNRA
homologous
HL_4LFB_032
HL_37824.7
HL_4V4S_0321/AV/13:22No text annotation
homologous
HL_6PMO_003
NA
HL_4V4S_0331/AV/31:39tRNA anticodon loop
homologous
HL_4WT8_216
HL_06059.6
HL_4V4S_1101/AV/50:64No text annotation
homologous
HL_5E81_238
NA
HL_4V4S_0341/AV/53:61T-loop with 2 stacked bulged bases
homologous
HL_1U0B_003
HL_28252.8
HL_4V4S_0351/AW/13:22No text annotation
homologous
HL_3WFS_001
NA
HL_4V4S_1111/AW/31:39tRNA anticodon loop
homologous
HL_7VNV_002
HL_06059.6
HL_4V4S_0371/AW/53:61T-loop with 2 stacked bulged bases
homologous
HL_4RDX_003
HL_28252.8
HL_4V4S_1261/BA/59:68Pseudoknot with intercalation
homologous
HL_4WF9_067
HL_93438.2
HL_4V4S_0391/BA/87:95No text annotation
homologous
HL_7RQB_002
NA
HL_4V4S_0401/BA/123:128No text annotation
homologous
HL_7RQB_003
NA
HL_4V4S_1271/BA/135:144No text annotation
HL_4V4S_0421/BA/194:201No text annotation
homologous
HL_4WF9_006
HL_30068.2
HL_4V4S_0431/BA/225:230No text annotation
homologous
HL_4WF9_007
HL_53890.2
HL_4V4S_0441/BA/246:252No text annotation
homologous
HL_4WF9_008
HL_37369.2
HL_4V4S_1281/BA/270J:270PNo text annotation
HL_4V4S_0461/BA/305:312No text annotation
homologous
HL_7RQB_010
NA
HL_4V4S_0471/BA/319:323No text annotation
homologous
HL_7A0S_011
HL_75660.5
HL_4V4S_0481/BA/327:335T-loop with unstacked turn
homologous
HL_4WF9_012
HL_27670.2
HL_4V4S_1131/BA/383:391No text annotation
HL_4V4S_0501/BA/410:417No text annotation
homologous
HL_7RQB_014
NA
HL_4V4S_0511/BA/462:467GNRA
homologous
HL_7RQB_015
NA
HL_4V4S_0521/BA/487:493GNRA
geometric
HL_5XTM_001
HL_37824.7
HL_4V4S_0541/BA/564:577No text annotation
HL_4V4S_0551/BA/605:623No text annotation
HL_4V4S_1151/BA/630:1635No text annotation
homologous
HL_9DFE_039
HL_57176.2
HL_4V4S_0581/BA/744:753No text annotation
homologous
HL_7RQB_023
NA
HL_4V4S_0591/BA/779:785No text annotation
homologous
HL_7A0S_023
HL_53890.2
HL_4V4S_0601/BA/826:831No text annotation
homologous
HL_7A0S_024
HL_55195.3
HL_4V4S_0611/BA/884:892No text annotation
homologous
HL_5J7L_158
NA
HL_4V4S_0621/BA/955:962GNRA
homologous
HL_7A0S_026
HL_37824.7
HL_4V4S_0631/BA/978:985No text annotation
homologous
HL_7A0S_027
HL_42998.2
HL_4V4S_0641/BA/1062:1076No text annotation
HL_4V4S_0651/BA/1092:1099No text annotation
homologous
HL_8VTW_029
NA
HL_4V4S_0661/BA/1171:1178No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_4V4S_1161/BA/1219:1230No text annotation
HL_4V4S_0671/BA/1221:1228tRNA D-loop
geometric
HL_4WT8_135
NA
HL_4V4S_0681/BA/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_7A0S_032
HL_28252.8
HL_4V4S_0691/BA/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_7A0S_033
HL_57176.2
HL_4V4S_0701/BA/1363:1368GNRA
homologous
HL_7RQB_035
NA
HL_4V4S_0711/BA/1389:1398No text annotation
homologous
HL_4WF9_035
HL_81545.2
HL_4V4S_0721/BA/1450:1461Pseudoknot
homologous
HL_7A0S_036
HL_93135.1
HL_4V4S_1171/BA/1489:1500No text annotation
HL_4V4S_0741/BA/1612:1619No text annotation
homologous
HL_4WF9_038
HL_89567.2
HL_4V4S_0761/BA/1691:1696UNCG
homologous
HL_4WF9_040
HL_34617.5
HL_4V4S_1291/BA/1717:1742No text annotation
HL_4V4S_0781/BA/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_4V4S_0791/BA/1777:1787No text annotation
homologous
HL_4WF9_043
HL_01962.2
HL_4V4S_0801/BA/1806:1811No text annotation
HL_4V4S_0811/BA/1864:1878GNRA
homologous
HL_7RQB_047
NA
HL_4V4S_0821/BA/1910:1920No text annotation
geometric
HL_1WZ2_007
HL_75660.5
HL_4V4S_0831/BA/1949:1957No text annotation
homologous
HL_7A0S_048
HL_20167.2
HL_4V4S_0841/BA/2027:2036No text annotation
homologous
HL_7A0S_049
HL_61996.2
HL_4V4S_0861/BA/2209:2215No text annotation
HL_4V4S_0871/BA/2247:2257No text annotation
HL_4V4S_0881/BA/2264:2276No text annotation
homologous
HL_7A0S_053
HL_91939.2
HL_4V4S_0891/BA/2304:2312No text annotation
HL_4V4S_0901/BA/2324:2331Pseudoknot geometry
geometric
HL_7RQB_056
NA
HL_4V4S_0911/BA/2355:2362GNRA with extra cWW
homologous
HL_4WF9_053
HL_04259.3
HL_4V4S_0921/BA/2374:2379GNRA
homologous
HL_4WF9_054
HL_37824.7
HL_4V4S_0931/BA/2404:2413No text annotation
geometric
HL_7A0S_058
HL_53454.2
HL_4V4S_0941/BA/2471:2479No text annotation
geometric
HL_4V9F_062
HL_32735.2
HL_4V4S_0951/BA/2528:2535No text annotation
homologous
HL_7RQB_061
NA
HL_4V4S_1301/BA/2551:2557No text annotation
homologous
HL_5J7L_195
HL_30068.2
HL_4V4S_1311/BA/2594:2599GNRA
homologous
HL_9DFE_061
HL_37824.7
HL_4V4S_1321/BA/2652:2668No text annotation
HL_4V4S_1211/BA/2701:2706Other HL
homologous
HL_9DFE_063
HL_22584.6
HL_4V4S_1221/BA/2744:2760No text annotation
HL_4V4S_1001/BA/2745:2759No text annotation
HL_4V4S_1011/BA/2792:2803No text annotation
homologous
HL_7A0S_066
NA
HL_4V4S_1021/BA/2819:2827No text annotation
homologous
HL_7A0S_067
HL_64690.6
HL_4V4S_1231/BA/2855:2862No text annotation
geometric
HL_8KAL_003
HL_75660.5
HL_4V4S_1031/BA/2856:2861GNRA
homologous
HL_7A0S_068
HL_37824.7
HL_4V4S_1331/BB/34:48No text annotation
homologous
HL_5J7L_215
HL_97756.2
HL_4V4S_1051/BB/86:90GNRA
homologous
HL_7RQB_071
NA

Problematic loops

#loop idProblemSequence
HL_4V4S_002No text annotation
HL_4V4S_106No text annotation
HL_4V4S_107GNRA with near cWW
HL_4V4S_022No text annotation
HL_4V4S_109No text annotation
HL_4V4S_029No text annotation
HL_4V4S_036No text annotation
HL_4V4S_038No text annotation
HL_4V4S_041No text annotation
HL_4V4S_112No text annotation
HL_4V4S_045No text annotation
HL_4V4S_049No text annotation
HL_4V4S_114Anticodon loop related
HL_4V4S_053No text annotation
HL_4V4S_056GNRA
HL_4V4S_057GNRA wlth tandem sheared
HL_4V4S_073No text annotation
HL_4V4S_075No text annotation
HL_4V4S_077No text annotation
HL_4V4S_118No text annotation
HL_4V4S_085No text annotation
HL_4V4S_119No text annotation
HL_4V4S_096No text annotation
HL_4V4S_097No text annotation
HL_4V4S_120tRNA anticodon loop
HL_4V4S_098No text annotation
HL_4V4S_099No text annotation
HL_4V4S_124No text annotation
HL_4V4S_104No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V4S_1401/AA/30:32,
1/AA/552:553
Single bulged G
homologous
IL_6CZR_113
NA
IL_4V4S_1691/AA/44:45,
1/AA/396:398
Single bulged A
homologous
IL_6CZR_114
NA
IL_4V4S_0031/AA/47:52,
1/AA/359:361
No text annotation
geometric
IL_5J7L_003
IL_14177.2
IL_4V4S_0041/AA/54:56,
1/AA/356:357
Minor groove platform
homologous
IL_4LFB_004
IL_51454.3
IL_4V4S_0051/AA/63:66,
1/AA/103:104
Multiple bulged bases
homologous
IL_6CZR_117
NA
IL_4V4S_0061/AA/67:69,
1/AA/99:102
Isolated non-canonical cWW pair
homologous
IL_4LFB_006
IL_87907.2
IL_4V4S_0071/AA/129:131,
1/AA/231:232
Minor groove platform
homologous
IL_4LFB_007
IL_33761.2
IL_4V4S_1701/AA/132:136,
1/AA/227:230
No text annotation
homologous
IL_4LFB_008
IL_64231.5
IL_4V4S_0091/AA/148:153,
1/AA/168:174
tWH-tWH-tHW-tHW
homologous
IL_4LFB_009
IL_12745.1
IL_4V4S_0101/AA/186:188,
1/AA/190K:191
Isolated non-canonical cWW pair
homologous
IL_4LFB_010
IL_87907.2
IL_4V4S_0111/AA/242:247,
1/AA/277:284
Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
IL_46174.3
IL_4V4S_1431/AA/249:252,
1/AA/274:275
No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_4V4S_0131/AA/291:293,
1/AA/304:309
No text annotation
IL_4V4S_0141/AA/367:369,
1/AA/392:393
Single bulged U
geometric
IL_5J7L_017
IL_89505.4
IL_4V4S_0151/AA/371:375,
1/AA/389:390
C-loop
homologous
IL_6CZR_127
NA
IL_4V4S_0161/AA/375:376,
1/AA/387:389
Single bulged G
geometric
IL_4LFB_016
IL_00225.13
IL_4V4S_0171/AA/409:416,
1/AA/427:433
No text annotation
homologous
IL_4LFB_017
IL_28026.3
IL_4V4S_0181/AA/446:450,
1/AA/483:488
6x5 Sarcin-Ricin; G-bulge
geometric
IL_6CZR_130
NA
IL_4V4S_0191/AA/450:455,
1/AA/477:483
No text annotation
homologous
IL_4LFB_019
IL_31561.1
IL_4V4S_1711/AA/504:511,
1/AA/540:541
SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_41203.4
IL_4V4S_0211/AA/515:521,
1/AA/528:536
Kink-turn related
homologous
IL_6CZR_133
NA
IL_4V4S_0231/AA/594:596,
1/AA/644:645
Major groove platform
homologous
IL_4LFB_024
IL_48076.6
IL_4V4S_0241/AA/597:598,
1/AA/640:643
Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_68140.4
IL_4V4S_0251/AA/605:612,
1/AA/628:633
No text annotation
geometric
IL_4LFB_026
IL_78349.3
IL_4V4S_0261/AA/654:655,
1/AA/751:754
Major groove platform; stack outside cWW
geometric
IL_5J7L_031
IL_50694.7
IL_4V4S_0271/AA/657:658,
1/AA/747:749
Major groove platform
homologous
IL_4LFB_028
IL_48076.6
IL_4V4S_1451/AA/662:666,
1/AA/740:743
Tandem non-canonical cWW pairs
homologous
IL_4LFB_029
IL_85033.2
IL_4V4S_0291/AA/673:677,
1/AA/713:717
Triple non-canonical cWW pairs
homologous
IL_5J7L_361
IL_49751.4
IL_4V4S_0301/AA/683:688,
1/AA/699:707
Kink-turn
homologous
IL_4LFB_031
IL_95727.1
IL_4V4S_0311/AA/774:778,
1/AA/804:805
Left turn
homologous
IL_4LFB_032
IL_29346.2
IL_4V4S_0321/AA/779:783,
1/AA/799:803
tSH-tHW-tHS
homologous
IL_5J7L_037
IL_17136.7
IL_4V4S_0331/AA/887:894,
1/AA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
IL_41756.4
IL_4V4S_0341/AA/922:923,
1/AA/1393:1395
Single bulged A
homologous
IL_4LFB_035
IL_31462.6
IL_4V4S_0351/AA/925:927,
1/AA/1390:1391
Single bulged G
homologous
IL_4LFB_036
IL_00225.13
IL_4V4S_0361/AA/933:935,
1/AA/1380:1384
Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_4V4S_0371/AA/953:954,
1/AA/1226:1228
Minor groove platform
homologous
IL_4LFB_038
IL_51454.3
IL_4V4S_0381/AA/1048:1050,
1/AA/1208:1209
No text annotation
homologous
IL_6CZR_152
NA
IL_4V4S_0391/AA/1052:1056,
1/AA/1204:1206
Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.5
IL_4V4S_0401/AA/1057:1058,
1/AA/1199:1203
Minor groove platform
homologous
IL_4LFB_045
IL_95583.2
IL_4V4S_0411/AA/1060:1061,
1/AA/1195:1197
Single bulged U
geometric
IL_2PN3_003
IL_89505.4
IL_4V4S_0421/AA/1061:1063,
1/AA/1193:1195
Isolated non-canonical cWW pair
geometric
IL_4LFB_047
IL_28037.2
IL_4V4S_0431/AA/1124:1127,
1/AA/1145:1149
No text annotation
IL_4V4S_1491/AA/1124:1132,
1/AA/1142:1149
No text annotation
IL_4V4S_0441/AA/1127:1132,
1/AA/1142:1145
No text annotation
IL_4V4S_0451/AA/1247:1253,
1/AA/1284:1290
No text annotation
homologous
IL_6CZR_160
NA
IL_4V4S_0461/AA/1255:1258,
1/AA/1277:1282
180 degree turn
homologous
IL_4LFB_052
IL_11344.2
IL_4V4S_0471/AA/1259:1262,
1/AA/1273:1276
Double sheared
geometric
IL_4V88_471
NA
IL_4V4S_0481/AA/1303:1308,
1/AA/1329:1334
No text annotation
geometric
IL_4LFB_055
IL_85536.2
IL_4V4S_0491/AA/1399:1401,
1/AA/1501:1504
No text annotation
geometric
IL_4V88_463
NA
IL_4V4S_0501/AA/1401:1404,
1/AA/1497:1501
No text annotation
geometric
IL_4V88_464
NA
IL_4V4S_0511/AA/1405:1407,
1/AA/1494:1496
Isolated non-canonical cWW pair
geometric
IL_4WF9_020
IL_87907.2
IL_4V4S_0521/AA/1407:1409,
1/AA/1491:1494
Isolated non-canonical cWW pair
geometric
IL_5TBW_378
NA
IL_4V4S_0531/AA/1412:1414,
1/AA/1486:1488
Isolated non-canonical cWW pair
homologous
IL_4LFB_059
IL_87907.2
IL_4V4S_0541/AA/1416:1419,
1/AA/1481:1484
Double sheared
homologous
IL_5J7L_062
IL_09705.15
IL_4V4S_0551/AA/1431:1435,
1/AA/1466:1469
UAA/GAN variation
homologous
IL_4LFB_062
IL_77691.5
IL_4V4S_0561/AA/1435:1437,
1/AA/1464:1466
Isolated non-canonical cWW pair
geometric
IL_6CZR_171
NA
IL_4V4S_0571/AA/1440:1447,
1/AA/1459:1461
No text annotation
homologous
IL_4LFB_064
IL_49061.1
IL_4V4S_0581/BA/24:30,
1/BA/510:516
Triple sheared with non-canonical cWW
homologous
IL_7RQB_001
NA
IL_4V4S_0601/BA/36:37,
1/BA/442:444
Single bulged A
homologous
IL_7A0S_002
IL_31462.6
IL_4V4S_0611/BA/43:44,
1/BA/434:436
Minor groove platform
homologous
IL_5J7L_247
IL_51454.3
IL_4V4S_0621/BA/81:85,
1/BA/97:105
Kink-turn
homologous
IL_7A0S_004
IL_94910.1
IL_4V4S_0631/BA/183:184,
1/BA/212:214
Single stack bend
homologous
IL_4WF9_007
IL_90729.1
IL_4V4S_0641/BA/188:194,
1/BA/201:208
8x7 Sarcin-Ricin; G-bulge
geometric
IL_7RQB_006
NA
IL_4V4S_0651/BA/239:245,
1/BA/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_007
NA
IL_4V4S_0661/BA/273:273E,
1/BA/363A:364
No text annotation
IL_4V4S_1501/BA/273:286,
1/BA/355:363
No text annotation
IL_4V4S_0671/BA/286:292,
1/BA/348:355
No text annotation
IL_4V4S_0681/BA/292:296,
1/BA/342:348
No text annotation
IL_4V4S_0691/BA/672:678,
1/BA/799:808
No text annotation
IL_4V4S_0701/BA/697:698,
1/BA/763:765
Single bulged A
geometric
IL_7A0S_016
IL_31462.6
IL_4V4S_0711/BA/702:703,
1/BA/728:730
Single bulged G
geometric
IL_4WF9_023
IL_00225.13
IL_4V4S_0721/BA/703:707,
1/BA/724:728
Triple sheared
homologous
IL_7RQB_021
NA
IL_4V4S_0731/BA/737:741,
1/BA/756:759
No text annotation
IL_4V4S_0741/BA/837:838,
1/BA/940:942
Single stack bend
homologous
IL_7A0S_022
IL_90729.1
IL_4V4S_0751/BA/844:850,
1/BA/928:934
No text annotation
homologous
IL_9DFE_024
IL_68243.1
IL_4V4S_0761/BA/858:862,
1/BA/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_7RQB_027
NA
IL_4V4S_0771/BA/862:863,
1/BA/913:915
Minor groove platform
homologous
IL_7A0S_028
IL_51454.3
IL_4V4S_0781/BA/864:868,
1/BA/909:912
C-loop with bulged stacked A's
homologous
IL_7A0S_029
IL_26222.2
IL_4V4S_0791/BA/875:879,
1/BA/898:902
Triple sheared
homologous
IL_5J7L_274
IL_17948.2
IL_4V4S_1721/BA/880:881,
1/BA/895:897
No text annotation
IL_4V4S_0811/BA/952:954,
1/BA/963:965
No text annotation
homologous
IL_7RQB_034
NA
IL_4V4S_0821/BA/992:996,
1/BA/1159:1162
No text annotation
geometric
IL_6AZ4_001
NA
IL_4V4S_0831/BA/998:1002,
1/BA/1153:1157
UAA/GAN
homologous
IL_7RQB_036
NA
IL_4V4S_0841/BA/1004:1011,
1/BA/1150:1151
SSU/LSU pseudoknot
homologous
IL_5J7L_278
IL_41203.4
IL_4V4S_0851/BA/1011:1013,
1/BA/1149:1150
Single bulged U
geometric
IL_7RQB_080
NA
IL_4V4S_0871/BA/1031:1034,
1/BA/1121:1123
Isolated non-canonical cWW pair
homologous
IL_7RQB_041
NA
IL_4V4S_1531/BA/1039:1051,
1/BA/1108:1116
No text annotation
IL_4V4S_0881/BA/1042:1051,
1/BA/1108:1113
No text annotation
IL_4V4S_1541/BA/1055:1057,
1/BA/1081:1104
No text annotation
IL_4V4S_0891/BA/1059:1062,
1/BA/1076:1079
No text annotation
IL_4V4S_1731/BA/1196:1198,
1/BA/1247:1250
Isolated cWS basepair
homologous
IL_4WF9_044
IL_42997.3
IL_4V4S_1741/BA/1201:1208,
1/BA/1238:1244
No text annotation
IL_4V4S_0921/BA/1208:1215,
1/BA/1234:1238
Kink-turn
geometric
IL_7RQB_047
NA
IL_4V4S_0931/BA/1219:1221,
1/BA/1228:1230
Stack and bulge
geometric
IL_2ET8_001
IL_31737.3
IL_4V4S_0941/BA/1319:1323,
1/BA/1331:1333
C-loop
homologous
IL_7RQB_051
NA
IL_4V4S_0951/BA/1351:1355,
1/BA/1376:1380
UAA/GAN
homologous
IL_7RQB_052
NA
IL_4V4S_0961/BA/1357:1361,
1/BA/1370:1374
tSH-tHW-tHS
homologous
IL_7A0S_049
IL_17136.7
IL_4V4S_0971/BA/1414:1423,
1/BA/1574:1588
No text annotation
IL_4V4S_1561/BA/1414:1429,
1/BA/1564:1588
No text annotation
IL_4V4S_1571/BA/1433:1435,
1/BA/1557:1560
No text annotation
homologous
IL_7A0S_052
IL_14688.1
IL_4V4S_0991/BA/1436:1440,
1/BA/1551:1556
No text annotation
IL_4V4S_1581/BA/1448:449,
1/BA/1462:1463
Single stack bend
homologous
IL_7A0S_054
IL_26793.1
IL_4V4S_1591/BA/1474:1483,
1/BA/1506:1517
No text annotation
IL_4V4S_1011/BA/1651:1656,
1/BA/2004:2006
No text annotation
homologous
IL_5J7L_304
IL_12566.4
IL_4V4S_1751/BA/1663:1665,
1/BA/1995:1997
No text annotation
IL_4V4S_1761/BA/1666:1669,
1/BA/1993:1994
Major groove platform; stack outside cWW
homologous
IL_4WF9_064
IL_50694.7
IL_4V4S_1031/BA/1666:1674,
1/BA/1990:1994
No text annotation
homologous
IL_7A0S_109
IL_22854.4
IL_4V4S_1771/BA/1669:1674,
1/BA/1990:1993
Intercalated tWH
homologous
IL_7A0S_062
IL_76758.2
IL_4V4S_1041/BA/1686:1691,
1/BA/1696:1702
tSH-tSH-tHH-tHS
geometric
IL_5TBW_078
NA
IL_4V4S_1051/BA/1770:1771,
1/BA/1980:1982
Single bulged A
homologous
IL_7RQB_069
NA
IL_4V4S_1061/BA/1798:1804,
1/BA/1813:1821
Kink-turn related
homologous
IL_4WF9_069
IL_17069.5
IL_4V4S_1071/BA/1837:1840,
1/BA/1902:1903
Minor groove platform, major groove intercalation
homologous
IL_7RQB_071
NA
IL_4V4S_1081/BA/1841:1842,
1/BA/1898:1901
Major groove intercalation
homologous
IL_7A0S_067
IL_66635.5
IL_4V4S_1091/BA/1846:1849,
1/BA/1893:1894
Minor groove platform
homologous
IL_7RQB_073
NA
IL_4V4S_1101/BA/1851:1855,
1/BA/1887:1891
UAA/GAN with extra pair
homologous
IL_7A0S_069
IL_89021.2
IL_4V4S_1111/BA/1856:1860,
1/BA/1882:1886
Triple sheared
homologous
IL_7RQB_075
NA
IL_4V4S_1121/BA/1933:1934,
1/BA/1964:1967
Bulged stacked bases
homologous
IL_5J7L_318
IL_22551.4
IL_4V4S_1131/BA/1934:1945,
1/BA/1961:1964
No text annotation
geometric
IL_7A0S_072
IL_04332.3
IL_4V4S_1141/BA/2050:2052,
1/BA/2617:2618
Major groove platform
homologous
IL_7A0S_073
IL_48076.6
IL_4V4S_1781/BA/2067:2069,
1/BA/2442:2443
Single bulged U
homologous
IL_5J7L_388
IL_89505.4
IL_4V4S_1161/BA/2070:2071,
1/BA/2438:2441
Minor groove platform
homologous
IL_7RQB_081
NA
IL_4V4S_1171/BA/2081:2083,
1/BA/2236:2239
Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA
IL_4V4S_1181/BA/2085:2087,
1/BA/2232:2234
Isolated non-canonical cWW pair
geometric
IL_8VTW_082
NA
IL_4V4S_1611/BA/2283:2299,
1/BA/2317:2325
No text annotation
IL_4V4S_1621/BA/2350:2353,
1/BA/2364:2367
Double sheared
homologous
IL_4WF9_087
IL_09705.15
IL_4V4S_1791/BA/2400:2403,
1/BA/2414:2416
Isolated non-canonical cWW pair
geometric
IL_8P9A_413
IL_28037.2
IL_4V4S_1211/BA/2454:2455,
1/BA/2496:2498
Major groove platform
homologous
IL_7A0S_084
IL_48076.6
IL_4V4S_1631/BA/2457:2461,
1/BA/2489:2494
No text annotation
IL_4V4S_1801/BA/2466:2470,
1/BA/2480:2484
No text annotation
homologous
IL_9DFE_095
IL_17948.2
IL_4V4S_1241/BA/2510:2512,
1/BA/2574:2578
Isolated non-canonical cWW with bulges
geometric
IL_7RQB_097
NA
IL_4V4S_1641/BA/2510:2513,
1/BA/2571:2578
No text annotation
IL_4V4S_1251/BA/2512:2513,
1/BA/2571:2574
No text annotation
homologous
IL_5J7L_341
IL_42626.2
IL_4V4S_1811/BA/2522:2523,
1/BA/2540:2543
No text annotation
homologous
IL_9DFE_099
IL_02555.1
IL_4V4S_1271/BA/2591:2592,
1/BA/2601:2603
Single bulged A
homologous
IL_7RQB_101
NA
IL_4V4S_1281/BA/2636:2640,
1/BA/2774:2782
tSH-tHS-tHW
homologous
IL_4WF9_099
IL_04638.3
IL_4V4S_1821/BA/2680:2684,
1/BA/2725:2727
C-loop
homologous
IL_5J7L_347
IL_63596.11
IL_4V4S_1661/BA/2686:2691,
1/BA/2718:2723
No text annotation
IL_4V4S_1671/BA/2736:2742,
1/BA/2762:2768
No text annotation
IL_4V4S_1321/BA/2737:2742,
1/BA/2762:2767
UAA/GAN with extra cWW
homologous
IL_7RQB_107
NA
IL_4V4S_1331/BA/2838:2840,
1/BA/2877:2880
Isolated non-canonical cWW with bulges
geometric
IL_5ML7_010
IL_07785.1
IL_4V4S_1341/BA/2843:2845,
1/BA/2871:2874
No text annotation
homologous
IL_4WF9_107
IL_31531.3
IL_4V4S_1351/BA/2845:2852,
1/BA/2865:2871
No text annotation
IL_4V4S_1681/BA/2845:2854,
1/BA/2863:2871
No text annotation
IL_4V4S_1361/BB/16:18,
1/BB/65:68
Decoding loop with one bulged A
geometric
IL_3LOA_003
IL_08770.1
IL_4V4S_1371/BB/23:28,
1/BB/56:60
No text annotation
homologous
IL_7RQB_112
NA
IL_4V4S_1381/BB/30:31,
1/BB/51:54
Minor groove platform, major groove intercalation
geometric
IL_1U9S_005
IL_95583.2
IL_4V4S_1391/BB/71:79,
1/BB/97:105
Bacterial 5S Loop E
homologous
IL_7RQB_115
NA

Problematic loops

#loop idProblemSequence
IL_4V4S_001Isolated non-canonical cWW pair
IL_4V4S_141Partly complementary
IL_4V4S_002Isolated non-canonical cWW pair
IL_4V4S_142No text annotation
IL_4V4S_008No text annotation
IL_4V4S_012No text annotation
IL_4V4S_020Isolated non-canonical cWW pair
IL_4V4S_022tSH-tHW-tHS
IL_4V4S_144No text annotation
IL_4V4S_028Partly complementary
IL_4V4S_146No text annotation
IL_4V4S_147Isolated non-canonical cWW pair
IL_4V4S_148No text annotation
IL_4V4S_059No text annotation
IL_4V4S_080Isolated non-canonical cWW pair
IL_4V4S_151Tandem non-canonical cWW pairs
IL_4V4S_152No text annotation
IL_4V4S_086No text annotation
IL_4V4S_155No text annotation
IL_4V4S_090Tandem non-canonical cWW pairs
IL_4V4S_091No text annotation
IL_4V4S_098Tandem non-canonical cWW pairs
IL_4V4S_100Decoding loop related
IL_4V4S_102No text annotation
IL_4V4S_115No text annotation
IL_4V4S_160Tandem non-canonical cWW pairs
IL_4V4S_119Triple sheared
IL_4V4S_120Tandem non-canonical cWW pairs
IL_4V4S_122No text annotation
IL_4V4S_123No text annotation
IL_4V4S_165No text annotation
IL_4V4S_126No text annotation
IL_4V4S_129No text annotation
IL_4V4S_130No text annotation
IL_4V4S_131Multiple bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V4S_0261/AA/3:1006,
1/AA/1023:1027,
1/AA/1034:1037
No text annotation
J3_4V4S_0271/AA/46:52,
1/AA/359:367,
1/AA/393:395
No text annotation
homologous
J3_4LFB_014
J3_46317.4
J3_4V4S_0021/AA/586:588,
1/AA/651:654,
1/AA/754:755
No text annotation
geometric
J3_6CZR_016
NA
J3_4V4S_0281/AA/586:588,
1/AA/651:655,
1/AA/751:755
No text annotation
homologous
J3_4LFB_015
J3_17385.4
J3_4V4S_0031/AA/672:673,
1/AA/717:725,
1/AA/732:734
No text annotation
homologous
J3_6CZR_017
NA
J3_4V4S_0041/AA/826:829,
1/AA/857:861,
1/AA/868:874
No text annotation
homologous
J3_4LFB_001
J3_85054.4
J3_4V4S_0051/AA/936:939,
1/AA/1344:1350,
1/AA/1372:1379
No text annotation
homologous
J3_4LFB_002
J3_25303.4
J3_4V4S_0291/AA/943:946,
1/AA/1235:1237,
1/AA/1337:1340
No text annotation
homologous
J3_5J7L_005
J3_52655.4
J3_4V4S_0071/AA/955:962,
1/AA/973:984,
1/AA/1221:1225
No text annotation
homologous
J3_4LFB_004
J3_83516.4
J3_4V4S_0301/AA/990:997,
1/AA/1044:1047,
1/AA/1210:1215
No text annotation
homologous
J3_4LFB_016
J3_76475.2
J3_4V4S_0411/AA/1064:1068,
1/AA/1107:1113,
1/AA/1187:1192
No text annotation
J3_4V4S_0421/AA/1073:1074,
1/AA/1083:1087,
1/AA/1098:1102
No text annotation
homologous
J3_5J7L_009
J3_76043.3
J3_4V4S_0121/AA/1116:1118,
1/AA/1155:1161,
1/AA/1175:1184
No text annotation
homologous
J3_4LFB_018
J3_17791.2
J3_4V4S_0131/AA/1237:1241,
1/AA/1296:1303,
1/AA/1334:1337
No text annotation
homologous
J3_5J7L_011
J3_37047.6
J3_4V4S_0321/AV/5:12,
1/AV/23:49,
1/AV/65:68
No text annotation
J3_4V4S_0431/BA/30:31,
1/BA/474:484,
1/BA/496:510
No text annotation
homologous
J3_4WF9_011
J3_92134.2
J3_4V4S_0341/BA/32:35,
1/BA/445:461,
1/BA/468:473
No text annotation
homologous
J3_7A0S_016
J3_30040.2
J3_4V4S_0441/BA/56:57,
1/BA/70:76,
1/BA/110:114
No text annotation
homologous
J3_4WF9_013
J3_35667.2
J3_4V4S_0451/BA/683:687,
1/BA/775:777,
1/BA/787:794
No text annotation
J3_4V4S_0461/BA/698:700,
1/BA/732:736,
1/BA/760:763
No text annotation
homologous
J3_7A0S_005
J3_44724.7
J3_4V4S_0171/BA/1055:1057,
1/BA/1081:1091,
1/BA/1100:1104
No text annotation
J3_4V4S_0181/BA/1298:1303,
1/BA/1625:1627,
1/BA/1639:1642
No text annotation
homologous
J3_7A0S_006
J3_32852.6
J3_4V4S_0191/BA/1306:1309,
1/BA/1605:1611,
1/BA/1620:1622
No text annotation
homologous
J3_7RQB_008
NA
J3_4V4S_0471/BA/1344:1350,
1/BA/1381:1385,
1/BA/1402:1403
No text annotation
homologous
J3_9DFE_012
J3_31965.2
J3_4V4S_0371/BA/1444:1445,
1/BA/1466:1473,
1/BA/1518:1547
No text annotation
J3_4V4S_0201/BA/2090:2093,
1/BA/2196:2205,
1/BA/2219:2229
No text annotation
homologous
J3_7A0S_009
J3_89368.5
J3_4V4S_0211/BA/2282:2284,
1/BA/2384:2397,
1/BA/2419:2427
No text annotation
J3_4V4S_0221/BA/2294:2299,
1/BA/2317:2324,
1/BA/2331:2338
No text annotation
J3_4V4S_0381/BA/2328:2347,
1/BA/2370:2372,
1/BA/2381:2387
No text annotation
J3_4V4S_0231/BA/2517:2520,
1/BA/2545:2547,
1/BA/2561:2567
No text annotation
homologous
J3_7RQB_012
NA
J3_4V4S_0481/BA/2814:2815,
1/BA/2831:2836,
1/BA/2882:2886
No text annotation
homologous
J3_9DFE_019
J3_76911.2
J3_4V4S_0251/BB/10:16,
1/BB/68:69,
1/BB/107:110
No text annotation
J3_4V4S_0401/BB/10:18,
1/BB/65:69,
1/BB/107:110
No text annotation
J4_4V4S_0011/AA/115:122,
1/AA/239:240,
1/AA/286:289,
1/AA/311:312
No text annotation
homologous
J4_4LFB_001
J4_35578.3
J4_4V4S_0021/AA/142:144,
1/AA/178:183,
1/AA/194:198,
1/AA/219:221
No text annotation
homologous
J4_4LFB_002
J4_88771.1
J4_4V4S_0031/AA/569:577,
1/AA/764:769,
1/AA/810:821,
1/AA/879:881
No text annotation
J4_4V4S_0141/AV/7:10,
1/AV/25:27,
1/AV/43:49,
1/AV/65:66
tRNA junction
homologous
J4_4V9Q_031
J4_70449.28
J4_4V4S_0151/AW/7:10,
1/AW/25:27,
1/AW/43:51,
1/AW/63:66
No text annotation
homologous
J4_7U2I_014
J4_47701.1
J4_4V4S_0051/BA/47:54,
1/BA/116:121,
1/BA/130:131,
1/BA/148:178
No text annotation
J4_4V4S_0161/BA/292:301,
1/BA/316:319,
1/BA/323:325,
1/BA/337:348
No text annotation
J4_4V4S_0071/BA/1270:1276,
1/BA/1294:1295,
1/BA/1645:1648,
1/BA/2009:2010
No text annotation
homologous
J4_9DFE_003
J4_64571.5
J4_4V4S_0081/BA/1310:1314,
1/BA/1338:1343,
1/BA/1404:1405,
1/BA/1597:1604
No text annotation
homologous
J4_9DFE_004
J4_69051.6
J4_4V4S_0091/BA/1772:1776,
1/BA/1788:1792,
1/BA/1827:1830,
1/BA/1975:1979
No text annotation
homologous
J4_9DFE_007
J4_61477.5
J4_4V4S_0101/BA/1833:1835,
1/BA/1905:1906,
1/BA/1924:1933,
1/BA/1967:1972
No text annotation
homologous
J4_9DFE_008
J4_93343.1
J4_4V4S_0171/BA/2074:2077,
1/BA/2243:2259,
1/BA/2281:2282,
1/BA/2427:2435
No text annotation
J4_4V4S_0181/BA/2282:2283,
1/BA/2325:2328,
1/BA/2387:2395,
1/BA/2421:2427
No text annotation
J4_4V4S_0131/BA/2642:2646,
1/BA/2674:2676,
1/BA/2731:2735,
1/BA/2769:2772
No text annotation
J5_4V4S_0071/AA/36:39,
1/AA/403:406,
1/AA/436:442,
1/AA/492:500,
1/AA/545:548
No text annotation
homologous
J5_4LFB_001
J5_70703.1
J5_4V4S_0021/AA/58:61,
1/AA/106:113,
1/AA/314:316,
1/AA/337:339,
1/AA/350:354
No text annotation
homologous
J5_4LFB_002
J5_59910.6
J5_4V4S_0081/BA/268:270D,
1/BA/270V:273E,
1/BA/363A:375,
1/BA/399:406,
1/BA/421:424
No text annotation
J5_4V4S_0091/BA/584:589,
1/BA/668:671,
1/BA/809:812,
1/BA/1195:1196,
1/BA/1250:1256
No text annotation
homologous
J5_7A0S_004
J5_74302.5
J5_4V4S_0101/BA/1674:1682,
1/BA/1706:1707,
1/BA/1751:1752,
1/BA/1756:1764,
1/BA/1988:1990
No text annotation
homologous
J5_7A0S_005
J5_62523.6
J5_4V4S_0111/BA/2054:2064,
1/BA/2446:2454,
1/BA/2498:2508,
1/BA/2580:2588,
1/BA/2606:2615
No text annotation
J6_4V4S_0011/BA/45:46,
1/BA/179:183,
1/BA/214:224,
1/BA/231:235,
1/BA/262:266,
1/BA/426:433
No text annotation
J6_4V4S_0031/BA/2074:2077,
1/BA/2243:2259,
1/BA/2281:2283,
1/BA/2325:2328,
1/BA/2387:2395,
1/BA/2421:2435
No text annotation
J6_4V4S_0021/BA/2074:2077,
1/BA/2243:2260,
1/BA/2280:2283,
1/BA/2325:2328,
1/BA/2387:2397,
1/BA/2419:2435
No text annotation
J7_4V4S_0021/BA/817:822,
1/BA/835:837,
1/BA/942:946,
1/BA/971:976,
1/BA/987:991,
1/BA/1163:1164,
1/BA/1185:1190
No text annotation
J11_4V4S_0021/BA/8:15,
1/BA/525:533,
1/BA/560:564,
1/BA/577:579,
1/BA/1261:1269,
1/BA/2011:2023,
1/BA/2040:2043,
1/BA/2625:2630,
1/BA/2788:2792,
1/BA/2803:2811,
1/BA/2889:2895
No text annotation

Problematic loops

#loop idProblemSequence
J3_4V4S_001No text annotation
J3_4V4S_006No text annotation
J3_4V4S_008No text annotation
J3_4V4S_009No text annotation
J3_4V4S_010No text annotation
J3_4V4S_031No text annotation
J3_4V4S_011No text annotation
J3_4V4S_033No text annotation
J3_4V4S_014No text annotation
J3_4V4S_015No text annotation
J3_4V4S_016No text annotation
J3_4V4S_035No text annotation
J3_4V4S_036No text annotation
J3_4V4S_039No text annotation
J3_4V4S_024No text annotation
J4_4V4S_004No text annotation
J4_4V4S_006No text annotation
J4_4V4S_011No text annotation
J4_4V4S_012No text annotation
J5_4V4S_001No text annotation
J5_4V4S_003No text annotation
J5_4V4S_004No text annotation
J5_4V4S_005No text annotation
J5_4V4S_006No text annotation
J7_4V4S_001No text annotation
J11_4V4S_001No text annotation

Coloring options:
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