3D structure

PDB id
4V4S (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the whole ribosomal complex.
Experimental method
X-RAY DIFFRACTION
Resolution
6.76 Å

Loop

Sequence
GUUCGAUCC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V4S_034 not in the Motif Atlas
Homologous match to HL_1U0B_003
Geometric discrepancy: 0.378
The information below is about HL_1U0B_003
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.8
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
140

Unit IDs

4V4S|1|AV|G|53
4V4S|1|AV|U|54
4V4S|1|AV|U|55
4V4S|1|AV|C|56
4V4S|1|AV|G|57
4V4S|1|AV|A|58
4V4S|1|AV|U|59
4V4S|1|AV|C|60
4V4S|1|AV|C|61

Current chains

Chain AV
P-site tRNA (Phe)

Nearby chains

Chain BA
Large subunit ribosomal RNA; LSU rRNA
Chain BG
50S ribosomal protein L5

Coloring options:


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