HL_4V4S_037

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

GU(PSU)CGAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4S_037 not in the Motif Atlas

Homologous match to HL_4RDX_003

Geometric discrepancy: 0.2358

The information below is about HL_4RDX_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

4V4S|1|AW|G|53
4V4S|1|AW|U|54
4V4S|1|AW|PSU|55
4V4S|1|AW|C|56
4V4S|1|AW|G|57
4V4S|1|AW|A|58
4V4S|1|AW|U|59
4V4S|1|AW|C|60
4V4S|1|AW|C|61

Current chains

Chain AW

E-site tRNA (Phe)

Nearby chains