HL_4V4S_052

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

CGGGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4S_052 not in the Motif Atlas

Geometric match to HL_5XTM_001

Geometric discrepancy: 0.1515

The information below is about HL_5XTM_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4V4S|1|BA|C|487
4V4S|1|BA|G|488
4V4S|1|BA|G|489
4V4S|1|BA|G|491
4V4S|1|BA|A|492
4V4S|1|BA|G|493

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BW

50S ribosomal protein L22