3D structure

PDB id
4V4S (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the whole ribosomal complex.
Experimental method
X-RAY DIFFRACTION
Resolution
6.76 Å

Loop

Sequence
CGUAAUAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V4S_065 not in the Motif Atlas
Homologous match to HL_8VTW_029
Geometric discrepancy: 0.5959
The information below is about HL_8VTW_029
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V4S|1|BA|C|1092
4V4S|1|BA|G|1093
4V4S|1|BA|U|1094
4V4S|1|BA|A|1095
4V4S|1|BA|A|1096
4V4S|1|BA|U|1097
4V4S|1|BA|A|1098
4V4S|1|BA|G|1099

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain AY
Peptide chain release factor 2
Chain B9
50S ribosomal protein L36
Chain BH
50S ribosomal protein L6
Chain BK
50S ribosomal protein L11

Coloring options:


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