HL_4V4S_073

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

GUAGGCAAAUCCGC

Length

14 nucleotides

Bulged bases

4V4S|1|BA|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4S_073 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3666

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V4S|1|BA|G|1488
4V4S|1|BA|U|1489
4V4S|1|BA|A|1490
4V4S|1|BA|G|1491
4V4S|1|BA|G|1492
4V4S|1|BA|C|1493
4V4S|1|BA|A|1494
4V4S|1|BA|A|1495
4V4S|1|BA|A|1496
4V4S|1|BA|U|1497
4V4S|1|BA|C|1498
4V4S|1|BA|C|1499
4V4S|1|BA|G|1500
4V4S|1|BA|C|1501

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2