HL_4V4S_082

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4S_082 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1796

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V4S|1|BA|G|1910
4V4S|1|BA|U|1911
4V4S|1|BA|A|1912
4V4S|1|BA|A|1913
4V4S|1|BA|C|1914
4V4S|1|BA|U|1915
4V4S|1|BA|A|1916
4V4S|1|BA|U|1917
4V4S|1|BA|A|1918
4V4S|1|BA|A|1919
4V4S|1|BA|C|1920

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AV

Transfer RNA; tRNA

Chain AY

Peptide chain release factor 2