HL_4V4S_084

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V4S|1|BA|A|2030, 4V4S|1|BA|A|2031, 4V4S|1|BA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4S_084 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.2748

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

4V4S|1|BA|G|2027
4V4S|1|BA|U|2028
4V4S|1|BA|G|2029
4V4S|1|BA|A|2030
4V4S|1|BA|A|2031
4V4S|1|BA|G|2032
4V4S|1|BA|A|2033
4V4S|1|BA|U|2034
4V4S|1|BA|G|2035
4V4S|1|BA|C|2036

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3