HL_4V4S_102

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

4V4S|1|BA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4S_102 not in the Motif Atlas

Homologous match to HL_7A0S_067

Geometric discrepancy: 0.2427

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V4S|1|BA|G|2819
4V4S|1|BA|A|2820
4V4S|1|BA|A|2821
4V4S|1|BA|G|2822
4V4S|1|BA|A|2823
4V4S|1|BA|C|2824
4V4S|1|BA|C|2825
4V4S|1|BA|A|2826
4V4S|1|BA|C|2827

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3