HL_4V4S_110
3D structure
- PDB id
- 4V4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the whole ribosomal complex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6.76 Å
Loop
- Sequence
- UGUGUUCGAUCCACA
- Length
- 15 nucleotides
- Bulged bases
- 4V4S|1|AV|U|59, 4V4S|1|AV|C|60
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4S_110 not in the Motif Atlas
- Homologous match to HL_5E81_238
- Geometric discrepancy: 0.5291
- The information below is about HL_5E81_238
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V4S|1|AV|U|50
4V4S|1|AV|G|51
4V4S|1|AV|U|52
4V4S|1|AV|G|53
4V4S|1|AV|U|54
4V4S|1|AV|U|55
4V4S|1|AV|C|56
4V4S|1|AV|G|57
4V4S|1|AV|A|58
4V4S|1|AV|U|59
4V4S|1|AV|C|60
4V4S|1|AV|C|61
4V4S|1|AV|A|62
4V4S|1|AV|C|63
4V4S|1|AV|A|64
Current chains
- Chain AV
- P-site tRNA (Phe)
Nearby chains
- Chain B0
- 50S ribosomal protein L27
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BG
- 50S ribosomal protein L5
- Chain BQ
- 50S ribosomal protein L16
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