HL_4V4V_009

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V4V|1|AA|A|344

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_009 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.1708

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

4V4V|1|AA|C|342
4V4V|1|AA|U|343
4V4V|1|AA|A|344
4V4V|1|AA|C|345
4V4V|1|AA|G|346
4V4V|1|AA|G|347

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain BI

50S ribosomal protein L14

Chain BN

50S ribosomal protein L19