4V4V Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V4V_001 | No text annotation | ||
| HL_4V4V_002 | No text annotation | ||
| HL_4V4V_003 | GNRA | ||
| HL_4V4V_004 | No text annotation | ||
| HL_4V4V_109 | No text annotation | ||
| HL_4V4V_122 | No text annotation | ||
| HL_4V4V_005 | No text annotation | ||
| HL_4V4V_110 | Mini UNCG | ||
| HL_4V4V_006 | GNRA related | ||
| HL_4V4V_007 | GNRA | ||
| HL_4V4V_008 | No text annotation | ||
| HL_4V4V_009 | UNCG | ||
| HL_4V4V_010 | GNRA | ||
| HL_4V4V_011 | UNCG | ||
| HL_4V4V_012 | GNRA | ||
| HL_4V4V_013 | No text annotation | ||
| HL_4V4V_014 | GNRA-like with tWH | ||
| HL_4V4V_015 | No text annotation | ||
| HL_4V4V_016 | GNRA | ||
| HL_4V4V_017 | No text annotation | ||
| HL_4V4V_018 | No text annotation | ||
| HL_4V4V_123 | Mini UNCG | ||
| HL_4V4V_019 | GNRA | ||
| HL_4V4V_020 | GNRA | ||
| HL_4V4V_021 | No text annotation | ||
| HL_4V4V_022 | No text annotation | ||
| HL_4V4V_111 | GNRA | ||
| HL_4V4V_112 | No text annotation | ||
| HL_4V4V_023 | Mini UNCG related | ||
| HL_4V4V_024 | GNRA | ||
| HL_4V4V_025 | T-loop related | ||
| HL_4V4V_026 | No text annotation | ||
| HL_4V4V_027 | GNRA | ||
| HL_4V4V_028 | GNRA | ||
| HL_4V4V_029 | T-loop with 3 stacked bulged bases | ||
| HL_4V4V_030 | No text annotation | ||
| HL_4V4V_124 | No text annotation | ||
| HL_4V4V_031 | UNCG | ||
| HL_4V4V_032 | GNRA | ||
| HL_4V4V_033 | tRNA D-loop | ||
| HL_4V4V_034 | No text annotation | ||
| HL_4V4V_035 | T-loop with 2 stacked bulged bases | ||
| HL_4V4V_036 | tRNA D-loop | ||
| HL_4V4V_037 | No text annotation | ||
| HL_4V4V_038 | T-loop with 2 stacked bulged bases | ||
| HL_4V4V_039 | tRNA D-loop | ||
| HL_4V4V_040 | No text annotation | ||
| HL_4V4V_041 | T-loop with 2 stacked bulged bases | ||
| HL_4V4V_042 | No text annotation | ||
| HL_4V4V_043 | No text annotation | ||
| HL_4V4V_044 | No text annotation | ||
| HL_4V4V_045 | No text annotation | ||
| HL_4V4V_046 | No text annotation | ||
| HL_4V4V_047 | No text annotation | ||
| HL_4V4V_048 | No text annotation | ||
| HL_4V4V_049 | T-loop with 2 stacked bulged bases | ||
| HL_4V4V_050 | T-loop with unstacked turn | ||
| HL_4V4V_051 | No text annotation | ||
| HL_4V4V_052 | No text annotation | ||
| HL_4V4V_053 | GNRA | ||
| HL_4V4V_054 | tRNA anticodon loop | ||
| HL_4V4V_113 | GNRA | ||
| HL_4V4V_055 | Externally structured | ||
| HL_4V4V_056 | No text annotation | ||
| HL_4V4V_114 | No text annotation | ||
| HL_4V4V_057 | No text annotation | ||
| HL_4V4V_058 | GNRA | ||
| HL_4V4V_059 | No text annotation | ||
| HL_4V4V_060 | GNRA with extra cWW | ||
| HL_4V4V_061 | No text annotation | ||
| HL_4V4V_062 | UNCG | ||
| HL_4V4V_063 | No text annotation | ||
| HL_4V4V_064 | No text annotation | ||
| HL_4V4V_115 | No text annotation | ||
| HL_4V4V_065 | tRNA anticodon loop | ||
| HL_4V4V_125 | GNRA | ||
| HL_4V4V_066 | No text annotation | ||
| HL_4V4V_067 | No text annotation | ||
| HL_4V4V_068 | GNRA wlth tandem sheared | ||
| HL_4V4V_069 | Anticodon loop related | ||
| HL_4V4V_070 | GNRA with extra cWW | ||
| HL_4V4V_116 | GNRA | ||
| HL_4V4V_071 | T-loop with 2 stacked bulged bases | ||
| HL_4V4V_072 | Pseudoknot geometry with 3' bulge | ||
| HL_4V4V_073 | No text annotation | ||
| HL_4V4V_074 | No text annotation | ||
| HL_4V4V_075 | No text annotation | ||
| HL_4V4V_117 | Pseudoknot geometry | ||
| HL_4V4V_076 | No text annotation | ||
| HL_4V4V_077 | No text annotation | ||
| HL_4V4V_078 | No text annotation | ||
| HL_4V4V_079 | GNRA | ||
| HL_4V4V_080 | UNCG | ||
| HL_4V4V_081 | No text annotation | ||
| HL_4V4V_082 | No text annotation | ||
| HL_4V4V_083 | No text annotation | ||
| HL_4V4V_084 | GNRA | ||
| HL_4V4V_085 | GNRA related | ||
| HL_4V4V_086 | No text annotation | ||
| HL_4V4V_118 | tRNA anticodon loop | ||
| HL_4V4V_087 | No text annotation | ||
| HL_4V4V_088 | No text annotation | ||
| HL_4V4V_089 | No text annotation | ||
| HL_4V4V_119 | No text annotation | ||
| HL_4V4V_126 | No text annotation | ||
| HL_4V4V_090 | GNRA | ||
| HL_4V4V_091 | No text annotation | ||
| HL_4V4V_092 | No text annotation | ||
| HL_4V4V_093 | No text annotation | ||
| HL_4V4V_094 | Pseudoknot geometry | ||
| HL_4V4V_095 | No text annotation | ||
| HL_4V4V_096 | GNRA | ||
| HL_4V4V_097 | No text annotation | ||
| HL_4V4V_098 | No text annotation | ||
| HL_4V4V_099 | GNRA variation | ||
| HL_4V4V_100 | No text annotation | ||
| HL_4V4V_101 | GNRA | ||
| HL_4V4V_102 | GNRA | ||
| HL_4V4V_103 | Ribsomal LSU H95 | ||
| HL_4V4V_104 | No text annotation | ||
| HL_4V4V_105 | No text annotation | ||
| HL_4V4V_120 | No text annotation | ||
| HL_4V4V_106 | No text annotation | ||
| HL_4V4V_121 | No text annotation | ||
| HL_4V4V_107 | No text annotation | ||
| HL_4V4V_108 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V4V_001 | Single bulged G | ||
| IL_4V4V_002 | Single bulged A | ||
| IL_4V4V_003 | Decoding loop related | ||
| IL_4V4V_004 | Minor groove platform | ||
| IL_4V4V_005 | Multiple bulged bases | ||
| IL_4V4V_006 | Isolated non-canonical cWW pair | ||
| IL_4V4V_007 | Isolated non-canonical cWW pair | ||
| IL_4V4V_008 | No text annotation | ||
| IL_4V4V_009 | Isolated non-canonical cWW contact | ||
| IL_4V4V_010 | tWH-tWH-tHW-tHW | ||
| IL_4V4V_011 | Kink-turn with non-sequential stacking | ||
| IL_4V4V_012 | No text annotation | ||
| IL_4V4V_013 | C-loop | ||
| IL_4V4V_014 | C-loop | ||
| IL_4V4V_015 | Single bulged G | ||
| IL_4V4V_016 | No text annotation | ||
| IL_4V4V_017 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V4V_018 | No text annotation | ||
| IL_4V4V_132 | No text annotation | ||
| IL_4V4V_019 | SSU/LSU pseudoknot | ||
| IL_4V4V_020 | Kink-turn related | ||
| IL_4V4V_021 | tSH-tHW-tHS | ||
| IL_4V4V_133 | No text annotation | ||
| IL_4V4V_022 | Major groove platform | ||
| IL_4V4V_023 | Major groove minor groove platform; mini C-loop | ||
| IL_4V4V_024 | No text annotation | ||
| IL_4V4V_025 | Major groove platform; stack outside cWW | ||
| IL_4V4V_026 | No text annotation | ||
| IL_4V4V_027 | Tandem non-canonical cWW pairs | ||
| IL_4V4V_028 | Kink-turn related | ||
| IL_4V4V_134 | No text annotation | ||
| IL_4V4V_029 | Left turn | ||
| IL_4V4V_030 | tSH-tHW-tHS | ||
| IL_4V4V_031 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V4V_032 | Single bulged A | ||
| IL_4V4V_033 | Single bulged G | ||
| IL_4V4V_034 | Minor groove platform | ||
| IL_4V4V_035 | Single bulged U | ||
| IL_4V4V_036 | Isolated cWS basepair | ||
| IL_4V4V_037 | Minor groove platform | ||
| IL_4V4V_038 | Single bulged U | ||
| IL_4V4V_039 | Isolated non-canonical cWW pair | ||
| IL_4V4V_040 | No text annotation | ||
| IL_4V4V_135 | No text annotation | ||
| IL_4V4V_041 | Minor groove platform | ||
| IL_4V4V_042 | Tandem non-canonical cWW pairs | ||
| IL_4V4V_043 | No text annotation | ||
| IL_4V4V_044 | 180 degree turn | ||
| IL_4V4V_045 | Double sheared with non-canonical cWW | ||
| IL_4V4V_136 | No text annotation | ||
| IL_4V4V_046 | No text annotation | ||
| IL_4V4V_047 | No text annotation | ||
| IL_4V4V_137 | No text annotation | ||
| IL_4V4V_048 | tSH-tHW | ||
| IL_4V4V_049 | Decoding loop related | ||
| IL_4V4V_050 | Isolated non-canonical cWW pair | ||
| IL_4V4V_051 | Double sheared | ||
| IL_4V4V_052 | Triple sheared related | ||
| IL_4V4V_053 | No text annotation | ||
| IL_4V4V_054 | Triple sheared with non-canonical cWW | ||
| IL_4V4V_055 | Single bulged A | ||
| IL_4V4V_056 | Major groove platform with extra cWW | ||
| IL_4V4V_057 | Kink-turn | ||
| IL_4V4V_156 | Single stack bend | ||
| IL_4V4V_058 | No text annotation | ||
| IL_4V4V_138 | No text annotation | ||
| IL_4V4V_059 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V4V_060 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V4V_139 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V4V_061 | No text annotation | ||
| IL_4V4V_062 | No text annotation | ||
| IL_4V4V_140 | No text annotation | ||
| IL_4V4V_063 | No text annotation | ||
| IL_4V4V_157 | No text annotation | ||
| IL_4V4V_064 | No text annotation | ||
| IL_4V4V_065 | Isolated non-canonical cWW pair | ||
| IL_4V4V_066 | No text annotation | ||
| IL_4V4V_067 | No text annotation | ||
| IL_4V4V_068 | Single stack bend | ||
| IL_4V4V_069 | No text annotation | ||
| IL_4V4V_158 | No text annotation | ||
| IL_4V4V_141 | No text annotation | ||
| IL_4V4V_070 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V4V_071 | Minor groove platform | ||
| IL_4V4V_072 | C-loop | ||
| IL_4V4V_142 | No text annotation | ||
| IL_4V4V_073 | Isolated near basepair | ||
| IL_4V4V_074 | No text annotation | ||
| IL_4V4V_075 | UAA/GAN with extra cWW | ||
| IL_4V4V_143 | UAA/GAN | ||
| IL_4V4V_076 | No text annotation | ||
| IL_4V4V_077 | Kink-turn related | ||
| IL_4V4V_144 | No text annotation | ||
| IL_4V4V_078 | No text annotation | ||
| IL_4V4V_079 | Isolated non-canonical cWW pair | ||
| IL_4V4V_145 | No text annotation | ||
| IL_4V4V_080 | Tandem non-canonical cWW pairs | ||
| IL_4V4V_081 | No text annotation | ||
| IL_4V4V_082 | No text annotation | ||
| IL_4V4V_083 | Major groove platform | ||
| IL_4V4V_146 | Isolated cWS basepair | ||
| IL_4V4V_084 | Partly complementary | ||
| IL_4V4V_147 | Tandem non-canonical cWW pairs | ||
| IL_4V4V_085 | No text annotation | ||
| IL_4V4V_086 | Kink-turn | ||
| IL_4V4V_087 | C-loop | ||
| IL_4V4V_088 | UAA/GAN with extra cWW | ||
| IL_4V4V_089 | Isolated non-canonical cWW contact | ||
| IL_4V4V_090 | Tandem non-canonical cWW pairs | ||
| IL_4V4V_148 | No text annotation | ||
| IL_4V4V_091 | Tandem non-canonical cWW pairs | ||
| IL_4V4V_149 | No text annotation | ||
| IL_4V4V_092 | No text annotation | ||
| IL_4V4V_093 | Single stack bend | ||
| IL_4V4V_094 | No text annotation | ||
| IL_4V4V_150 | No text annotation | ||
| IL_4V4V_095 | No text annotation | ||
| IL_4V4V_096 | No text annotation | ||
| IL_4V4V_151 | No text annotation | ||
| IL_4V4V_097 | No text annotation | ||
| IL_4V4V_098 | tSH-tSH-tHH-tHS | ||
| IL_4V4V_099 | Tandem non-canonical cWW pairs | ||
| IL_4V4V_152 | Isolated non-canonical cWW pair | ||
| IL_4V4V_159 | Single bulged A | ||
| IL_4V4V_100 | Kink-turn related | ||
| IL_4V4V_101 | Bulged stacked bases | ||
| IL_4V4V_102 | No text annotation | ||
| IL_4V4V_153 | No text annotation | ||
| IL_4V4V_160 | No text annotation | ||
| IL_4V4V_103 | No text annotation | ||
| IL_4V4V_104 | Single bulged U | ||
| IL_4V4V_105 | Isolated tHS basepair with bulges | ||
| IL_4V4V_106 | Isolated non-canonical cWW pair | ||
| IL_4V4V_107 | Isolated non-canonical cWW pair | ||
| IL_4V4V_108 | Isolated tHS basepair with bulges | ||
| IL_4V4V_109 | Tandem non-canonical cWW pairs | ||
| IL_4V4V_110 | Major groove platform | ||
| IL_4V4V_111 | No text annotation | ||
| IL_4V4V_112 | Double sheared with non-canonical cWW | ||
| IL_4V4V_113 | Major groove platform | ||
| IL_4V4V_114 | Isolated non-canonical cWW with bulges | ||
| IL_4V4V_115 | Multiple bulged bases | ||
| IL_4V4V_116 | Major groove platform with intercalation | ||
| IL_4V4V_117 | Single bulged A | ||
| IL_4V4V_118 | tSH-tHS-tHW | ||
| IL_4V4V_119 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V4V_120 | C-loop | ||
| IL_4V4V_121 | No text annotation | ||
| IL_4V4V_154 | UAA/GAN variation | ||
| IL_4V4V_122 | Multiple bulged bases | ||
| IL_4V4V_155 | Isolated non-canonical cWW pair | ||
| IL_4V4V_123 | UAA/GAN with extra cWW | ||
| IL_4V4V_161 | Major groove intercalation | ||
| IL_4V4V_124 | Isolated non-canonical cWW with bulges | ||
| IL_4V4V_125 | Tandem non-canonical cWW pairs | ||
| IL_4V4V_126 | tHS double platform | ||
| IL_4V4V_127 | No text annotation | ||
| IL_4V4V_128 | No text annotation | ||
| IL_4V4V_162 | Major groove minor groove platform; mini C-loop | ||
| IL_4V4V_129 | No text annotation | ||
| IL_4V4V_130 | Isolated non-canonical cWW pair | ||
| IL_4V4V_131 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V4V_001 | No text annotation | ||
| J3_4V4V_018 | No text annotation | ||
| J3_4V4V_002 | No text annotation | ||
| J3_4V4V_031 | No text annotation | ||
| J3_4V4V_019 | No text annotation | ||
| J3_4V4V_020 | No text annotation | ||
| J3_4V4V_003 | No text annotation | ||
| J3_4V4V_021 | No text annotation | ||
| J3_4V4V_004 | No text annotation | ||
| J3_4V4V_005 | No text annotation | ||
| J3_4V4V_032 | No text annotation | ||
| J3_4V4V_006 | No text annotation | ||
| J3_4V4V_022 | No text annotation | ||
| J3_4V4V_007 | No text annotation | ||
| J3_4V4V_008 | No text annotation | ||
| J3_4V4V_023 | No text annotation | ||
| J3_4V4V_024 | No text annotation | ||
| J3_4V4V_025 | No text annotation | ||
| J3_4V4V_033 | No text annotation | ||
| J3_4V4V_034 | No text annotation | ||
| J3_4V4V_026 | No text annotation | ||
| J3_4V4V_009 | No text annotation | ||
| J3_4V4V_010 | No text annotation | ||
| J3_4V4V_011 | No text annotation | ||
| J3_4V4V_012 | No text annotation | ||
| J3_4V4V_027 | No text annotation | ||
| J3_4V4V_013 | No text annotation | ||
| J3_4V4V_028 | No text annotation | ||
| J3_4V4V_029 | No text annotation | ||
| J3_4V4V_014 | No text annotation | ||
| J3_4V4V_015 | No text annotation | ||
| J3_4V4V_016 | No text annotation | ||
| J3_4V4V_017 | No text annotation | ||
| J3_4V4V_035 | No text annotation | ||
| J3_4V4V_030 | No text annotation | ||
| J4_4V4V_001 | No text annotation | ||
| J4_4V4V_002 | No text annotation | ||
| J4_4V4V_003 | No text annotation | ||
| J4_4V4V_004 | No text annotation | ||
| J4_4V4V_005 | No text annotation | ||
| J4_4V4V_006 | tRNA junction | ||
| J4_4V4V_007 | tRNA junction | ||
| J4_4V4V_008 | tRNA junction | ||
| J4_4V4V_009 | No text annotation | ||
| J4_4V4V_010 | No text annotation | ||
| J4_4V4V_017 | No text annotation | ||
| J4_4V4V_011 | No text annotation | ||
| J4_4V4V_012 | No text annotation | ||
| J4_4V4V_013 | No text annotation | ||
| J4_4V4V_018 | No text annotation | ||
| J4_4V4V_014 | No text annotation | ||
| J4_4V4V_019 | No text annotation | ||
| J4_4V4V_015 | No text annotation | ||
| J4_4V4V_016 | No text annotation | ||
| J5_4V4V_001 | No text annotation | ||
| J5_4V4V_002 | No text annotation | ||
| J5_4V4V_003 | No text annotation | ||
| J5_4V4V_004 | No text annotation | ||
| J5_4V4V_007 | No text annotation | ||
| J5_4V4V_005 | No text annotation | ||
| J5_4V4V_006 | No text annotation | ||
| J6_4V4V_001 | No text annotation | ||
| J7_4V4V_001 | No text annotation | ||
| J9_4V4V_001 | No text annotation |
Coloring options: