RNA 3D Hub //

4V4V Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V4V_0011/AA/12:22No text annotation
homologous
HL_4LFB_001
HL_89881.5
HL_4V4V_0021/AA/80:89No text annotation
homologous
HL_4LFB_002
HL_31585.4
HL_4V4V_0031/AA/158:163GNRA
homologous
HL_4LFB_003
HL_37824.7
HL_4V4V_1221/AA/186:191No text annotation
HL_4V4V_1101/AA/201:216Mini UNCG
homologous
HL_4LFB_005
HL_48778.2
HL_4V4V_0061/AA/259:267GNRA related
homologous
HL_4LFB_006
HL_84299.4
HL_4V4V_0071/AA/296:301GNRA
homologous
HL_5J7L_007
HL_37824.7
HL_4V4V_0081/AA/320:333No text annotation
homologous
HL_4LFB_008
HL_81205.3
HL_4V4V_0091/AA/342:347UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_4V4V_0101/AA/379:384GNRA
homologous
HL_4LFB_010
HL_37824.7
HL_4V4V_0111/AA/419:424UNCG
homologous
HL_4LFB_011
HL_34617.5
HL_4V4V_0121/AA/458:474GNRA
geometric
HL_4LFB_012
HL_37824.7
HL_4V4V_0131/AA/522:527No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_4V4V_0141/AA/617:623No text annotation
homologous
HL_4LFB_014
HL_10453.3
HL_4V4V_0151/AA/689:698No text annotation
homologous
HL_4LFB_015
HL_75293.5
HL_4V4V_0161/AA/726:731GNRA
homologous
HL_4LFB_016
HL_37824.7
HL_4V4V_0171/AA/786:796No text annotation
homologous
HL_4LFB_017
HL_75293.5
HL_4V4V_1231/AA/838:848Mini UNCG
homologous
HL_6CZR_089
NA
HL_4V4V_0191/AA/862:867GNRA
homologous
HL_4LFB_019
HL_37824.7
HL_4V4V_0201/AA/897:902GNRA
homologous
HL_4LFB_020
HL_37824.7
HL_4V4V_0211/AA/963:972No text annotation
homologous
HL_4LFB_021
HL_50779.4
HL_4V4V_1111/AA/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.7
HL_4V4V_0231/AA/1029:1032Mini UNCG related
geometric
HL_4V9F_004
HL_56334.1
HL_4V4V_0241/AA/1076:1081GNRA
homologous
HL_4LFB_024
HL_37824.7
HL_4V4V_0251/AA/1089:1096T-loop related
homologous
HL_4LFB_025
HL_77436.5
HL_4V4V_0261/AA/1134:1140No text annotation
homologous
HL_4LFB_026
HL_87954.2
HL_4V4V_0271/AA/1165:1171GNRA
homologous
HL_4LFB_027
HL_37824.7
HL_4V4V_0281/AA/1265:1270GNRA
homologous
HL_4LFB_028
HL_37824.7
HL_4V4V_0291/AA/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_5J7L_028
HL_02887.3
HL_4V4V_1241/AA/1356:1366No text annotation
homologous
HL_5J7L_029
HL_06226.4
HL_4V4V_0311/AA/1449:1454UNCG
homologous
HL_4LFB_031
HL_34617.5
HL_4V4V_0321/AA/1515:1520GNRA
geometric
HL_4V9F_017
HL_37824.7
HL_4V4V_0331/AU/13:22tRNA D-loop
homologous
HL_7UQ6_001
HL_20811.4
HL_4V4V_0341/AU/30:40No text annotation
homologous
HL_5IB8_208
HL_36684.4
HL_4V4V_0351/AU/53:61T-loop with 2 stacked bulged bases
homologous
HL_6PMO_005
NA
HL_4V4V_0361/AV/13:22tRNA D-loop
homologous
HL_7UQ6_001
HL_20811.4
HL_4V4V_0371/AV/30:40No text annotation
homologous
HL_5IB8_208
HL_36684.4
HL_4V4V_0381/AV/53:61T-loop with 2 stacked bulged bases
homologous
HL_1QTQ_003
HL_28252.8
HL_4V4V_0391/AW/13:22tRNA D-loop
homologous
HL_7UQ6_001
HL_20811.4
HL_4V4V_0401/AW/30:40No text annotation
homologous
HL_5IB8_208
HL_36684.4
HL_4V4V_0411/AW/53:61T-loop with 2 stacked bulged bases
homologous
HL_6PMO_005
NA
HL_4V4V_0421/B0/59:68No text annotation
homologous
HL_7RQB_001
NA
HL_4V4V_0431/B0/87:95No text annotation
homologous
HL_7RQB_002
NA
HL_4V4V_0441/B0/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.5
HL_4V4V_0451/B0/154:172No text annotation
geometric
HL_4V9F_005
HL_87954.2
HL_4V4V_0461/B0/194:201No text annotation
homologous
HL_7RQB_006
NA
HL_4V4V_0471/B0/225:230No text annotation
geometric
HL_8C3A_039
NA
HL_4V4V_0481/B0/246:252No text annotation
homologous
HL_4WF9_008
HL_37369.2
HL_4V4V_0491/B0/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
HL_01609.3
HL_4V4V_0501/B0/327:335T-loop with unstacked turn
homologous
HL_7RQB_012
NA
HL_4V4V_0511/B0/381:393No text annotation
geometric
HL_4V9F_013
HL_87463.1
HL_4V4V_0521/B0/410:417No text annotation
homologous
HL_7RQB_014
NA
HL_4V4V_0531/B0/462:467GNRA
homologous
HL_4WF9_015
HL_37824.7
HL_4V4V_1131/B0/487:493GNRA
homologous
HL_5J7L_148
HL_37824.7
HL_4V4V_0551/B0/543:551Externally structured
geometric
HL_8C3A_022
NA
HL_4V4V_0561/B0/566:575No text annotation
homologous
HL_7RQB_018
NA
HL_4V4V_0571/B0/606:622No text annotation
HL_4V4V_0581/B0/629:634GNRA
homologous
HL_5J7L_152
HL_37824.7
HL_4V4V_0591/B0/641:647No text annotation
homologous
HL_7RQB_021
NA
HL_4V4V_0601/B0/712:719GNRA with extra cWW
geometric
HL_7A0S_056
HL_04259.3
HL_4V4V_0611/B0/744:753No text annotation
homologous
HL_7RQB_023
NA
HL_4V4V_0621/B0/779:785UNCG
geometric
HL_6JQ6_004
HL_34617.5
HL_4V4V_0631/B0/826:831No text annotation
homologous
HL_7A0S_024
HL_55195.3
HL_4V4V_0641/B0/883:893No text annotation
HL_4V4V_1251/B0/955:962GNRA
homologous
HL_7A0S_026
HL_37824.7
HL_4V4V_0661/B0/978:985No text annotation
homologous
HL_7RQB_028
NA
HL_4V4V_0671/B0/1064:1074No text annotation
homologous
HL_6PRV_001
HL_19210.3
HL_4V4V_0681/B0/1092:1099GNRA wlth tandem sheared
homologous
HL_6PRV_002
HL_81538.2
HL_4V4V_0691/B0/1170:1179Anticodon loop related
geometric
HL_4V9F_032
HL_77082.1
HL_4V4V_1161/B0/1222:1227GNRA
homologous
HL_9DFE_030
HL_37824.7
HL_4V4V_0711/B0/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_7A0S_032
HL_28252.8
HL_4V4V_0721/B0/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_4WF9_033
HL_57176.2
HL_4V4V_0731/B0/1363:1368No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_4V4V_0741/B0/1389:1398No text annotation
homologous
HL_5J7L_168
HL_81545.2
HL_4V4V_0751/B0/1451:1461No text annotation
HL_4V4V_1171/B0/1485:1503Pseudoknot geometry
geometric
HL_3IVK_004
HL_30680.3
HL_4V4V_0761/B0/1486:1502No text annotation
HL_4V4V_0771/B0/1533:1538No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_4V4V_0781/B0/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_4V4V_0791/B0/1630:1636GNRA
homologous
HL_5J7L_174
HL_37824.7
HL_4V4V_0801/B0/1691:1696UNCG
geometric
HL_5Y85_004
HL_34617.5
HL_4V4V_0811/B0/1718:1741No text annotation
homologous
HL_7RQB_043
NA
HL_4V4V_0821/B0/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_4V4V_0831/B0/1777:1787No text annotation
homologous
HL_7RQB_045
NA
HL_4V4V_0841/B0/1806:1811GNRA
homologous
HL_7RQB_046
NA
HL_4V4V_0851/B0/1864:1878GNRA related
geometric
HL_4V9F_049
HL_77436.5
HL_4V4V_1181/B0/1911:1919tRNA anticodon loop
geometric
HL_2AZX_005
HL_06059.6
HL_4V4V_0871/B0/1949:1957No text annotation
homologous
HL_7RQB_049
NA
HL_4V4V_0881/B0/2027:2036No text annotation
homologous
HL_4WF9_047
HL_61996.2
HL_4V4V_1261/B0/2108:2181No text annotation
HL_4V4V_0901/B0/2209:2215GNRA
geometric
HL_6N2V_003
HL_37824.7
HL_4V4V_0911/B0/2248:2256No text annotation
homologous
HL_7RQB_053
NA
HL_4V4V_0921/B0/2264:2276No text annotation
homologous
HL_4WF9_050
HL_91939.2
HL_4V4V_0931/B0/2303:2313No text annotation
HL_4V4V_0941/B0/2324:2331Pseudoknot geometry
homologous
HL_7RQB_056
NA
HL_4V4V_0951/B0/2354:2363No text annotation
HL_4V4V_0961/B0/2374:2379GNRA
homologous
HL_4WF9_054
HL_37824.7
HL_4V4V_0971/B0/2404:2413No text annotation
geometric
HL_4V83_139
NA
HL_4V4V_0981/B0/2471:2479No text annotation
homologous
HL_7RQB_060
NA
HL_4V4V_0991/B0/2528:2535No text annotation
homologous
HL_7A0S_060
HL_31585.4
HL_4V4V_1001/B0/2551:2557No text annotation
homologous
HL_4WF9_058
HL_30068.2
HL_4V4V_1011/B0/2594:2599GNRA
homologous
HL_5J7L_196
HL_37824.7
HL_4V4V_1021/B0/2658:2663GNRA
homologous
HL_5J7L_197
HL_37824.7
HL_4V4V_1031/B0/2700:2707Ribsomal LSU H95
homologous
HL_7A0S_064
HL_65794.5
HL_4V4V_1041/B0/2745:2759No text annotation
homologous
HL_4WF9_062
HL_74055.2
HL_4V4V_1051/B0/2819:2827No text annotation
HL_4V4V_1061/B0/2854:2863No text annotation
HL_4V4V_1071/B9/34:48No text annotation
geometric
HL_4V9F_074
HL_97756.2
HL_4V4V_1081/B9/86:90No text annotation
geometric
HL_4V9F_003
HL_75660.5

Problematic loops

#loop idProblemSequence
HL_4V4V_004No text annotation
HL_4V4V_109No text annotation
HL_4V4V_005No text annotation
HL_4V4V_018No text annotation
HL_4V4V_022No text annotation
HL_4V4V_112No text annotation
HL_4V4V_030No text annotation
HL_4V4V_054tRNA anticodon loop
HL_4V4V_114No text annotation
HL_4V4V_115No text annotation
HL_4V4V_065tRNA anticodon loop
HL_4V4V_070GNRA with extra cWW
HL_4V4V_086No text annotation
HL_4V4V_089No text annotation
HL_4V4V_119No text annotation
HL_4V4V_120No text annotation
HL_4V4V_121No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V4V_0011/AA/30:32,
1/AA/552:553		Single bulged G
homologous
IL_4LFB_001
IL_00225.13
IL_4V4V_0021/AA/44:45,
1/AA/396:398		Single bulged A
homologous
IL_5J7L_002
IL_31462.6
IL_4V4V_0031/AA/47:52,
1/AA/359:361		Decoding loop related
geometric
IL_3C3Z_002
IL_31737.3
IL_4V4V_0041/AA/54:56,
1/AA/356:357		Minor groove platform
homologous
IL_4LFB_004
IL_51454.3
IL_4V4V_0051/AA/63:66,
1/AA/103:104		Multiple bulged bases
homologous
IL_4LFB_005
IL_82107.4
IL_4V4V_0061/AA/67:69,
1/AA/99:102		Isolated non-canonical cWW pair
homologous
IL_4LFB_006
IL_87907.2
IL_4V4V_0071/AA/128:131,
1/AA/231:233		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
IL_57744.1
IL_4V4V_0081/AA/132:136,
1/AA/227:230		No text annotation
homologous
IL_4LFB_008
IL_64231.5
IL_4V4V_0091/AA/144:146,
1/AA/176:178		Isolated non-canonical cWW contact
geometric
IL_5UNE_001
IL_44465.1
IL_4V4V_0101/AA/147:153,
1/AA/168:175		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
IL_80604.6
IL_4V4V_0111/AA/242:247,
1/AA/277:284		Kink-turn with non-sequential stacking
homologous
IL_4LFB_011
IL_46174.3
IL_4V4V_0121/AA/249:252,
1/AA/274:275		No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_4V4V_0131/AA/292:293,
1/AA/304:308		C-loop
homologous
IL_4LFB_013
IL_03109.3
IL_4V4V_0141/AA/371:375,
1/AA/389:390		C-loop
homologous
IL_4LFB_015
IL_03109.3
IL_4V4V_0151/AA/375:376,
1/AA/387:389		Single bulged G
geometric
IL_5J7L_019
IL_00225.13
IL_4V4V_0161/AA/409:416,
1/AA/427:433		No text annotation
homologous
IL_4LFB_017
IL_28026.3
IL_4V4V_0171/AA/446:450,
1/AA/483:488		6x5 Sarcin-Ricin; G-bulge
homologous
IL_4LFB_018
IL_88269.4
IL_4V4V_0181/AA/450:455,
1/AA/477:483		No text annotation
homologous
IL_4LFB_019
IL_31561.1
IL_4V4V_0191/AA/504:511,
1/AA/540:541		SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_41203.4
IL_4V4V_0201/AA/515:521,
1/AA/528:536		Kink-turn related
geometric
IL_4V88_415
NA
IL_4V4V_0211/AA/580:584,
1/AA/757:761		tSH-tHW-tHS
homologous
IL_4LFB_023
IL_17136.7
IL_4V4V_0221/AA/594:596,
1/AA/644:645		Major groove platform
homologous
IL_4LFB_024
IL_48076.6
IL_4V4V_0231/AA/597:598,
1/AA/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_68140.4
IL_4V4V_0241/AA/605:612,
1/AA/628:633		No text annotation
homologous
IL_4LFB_026
IL_78349.3
IL_4V4V_0251/AA/654:655,
1/AA/751:754		Major groove platform; stack outside cWW
geometric
IL_4QLM_004
IL_50694.7
IL_4V4V_0261/AA/657:659,
1/AA/746:749		No text annotation
geometric
IL_6DME_003
IL_55516.2
IL_4V4V_0271/AA/662:666,
1/AA/740:743		Tandem non-canonical cWW pairs
homologous
IL_4LFB_029
IL_85033.2
IL_4V4V_1341/AA/683:688,
1/AA/699:707		No text annotation
homologous
IL_6CZR_143
NA
IL_4V4V_0291/AA/774:778,
1/AA/804:805		Left turn
homologous
IL_4LFB_032
IL_29346.2
IL_4V4V_0301/AA/779:783,
1/AA/799:803		tSH-tHW-tHS
homologous
IL_4LFB_033
IL_17136.7
IL_4V4V_0311/AA/887:894,
1/AA/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_41756.4
IL_4V4V_0321/AA/922:923,
1/AA/1393:1395		Single bulged A
homologous
IL_5J7L_039
IL_31462.6
IL_4V4V_0331/AA/925:927,
1/AA/1390:1391		Single bulged G
homologous
IL_4LFB_036
IL_00225.13
IL_4V4V_0341/AA/953:954,
1/AA/1226:1228		Minor groove platform
homologous
IL_4LFB_038
IL_51454.3
IL_4V4V_0351/AA/1048:1050,
1/AA/1208:1209		Single bulged U
homologous
IL_4LFB_042
IL_89505.4
IL_4V4V_0361/AA/1052:1056,
1/AA/1204:1206		Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.5
IL_4V4V_0371/AA/1057:1058,
1/AA/1199:1203		Minor groove platform
homologous
IL_4LFB_045
IL_95583.2
IL_4V4V_0381/AA/1060:1061,
1/AA/1195:1197		Single bulged U
homologous
IL_6CZR_156
NA
IL_4V4V_0391/AA/1061:1063,
1/AA/1193:1195		Isolated non-canonical cWW pair
geometric
IL_4LFB_047
IL_28037.2
IL_4V4V_0401/AA/1121:1128,
1/AA/1143:1152		No text annotation
IL_4V4V_1351/AA/1124:1132,
1/AA/1142:1149		No text annotation
IL_4V4V_0411/AA/1128:1132,
1/AA/1142:1143		Minor groove platform
homologous
IL_4LFB_049
IL_15052.4
IL_4V4V_0421/AA/1244:1247,
1/AA/1290:1293		Tandem non-canonical cWW pairs
geometric
IL_5EW4_002
IL_85033.2
IL_4V4V_0431/AA/1247:1253,
1/AA/1284:1290		No text annotation
homologous
IL_4LFB_051
IL_09129.2
IL_4V4V_0441/AA/1255:1258,
1/AA/1277:1282		180 degree turn
homologous
IL_4LFB_052
IL_11344.2
IL_4V4V_0451/AA/1259:1263,
1/AA/1272:1276		Triple sheared
homologous
IL_5J7L_056
IL_17948.2
IL_4V4V_1361/AA/1303:1308,
1/AA/1329:1334		No text annotation
homologous
IL_4LFB_055
IL_85536.2
IL_4V4V_0471/AA/1401:1404,
1/AA/1497:1501		No text annotation
geometric
IL_4V88_464
NA
IL_4V4V_1371/AA/1401:1407,
1/AA/1494:1501		No text annotation
IL_4V4V_0481/AA/1404:1407,
1/AA/1494:1497		tSH-tHW
geometric
IL_5UNE_005
IL_85033.2
IL_4V4V_0491/AA/1407:1409,
1/AA/1491:1494		Decoding loop related
geometric
IL_3C3Z_002
IL_31737.3
IL_4V4V_0501/AA/1412:1414,
1/AA/1486:1488		Isolated non-canonical cWW pair
homologous
IL_4LFB_059
IL_87907.2
IL_4V4V_0511/AA/1416:1419,
1/AA/1481:1484		Double sheared
homologous
IL_4LFB_060
IL_09705.15
IL_4V4V_0521/AA/1430:1435,
1/AA/1466:1470		Triple sheared related
homologous
IL_5J7L_063
IL_80231.1
IL_4V4V_0531/AA/1440:1448,
1/AA/1455:1461		No text annotation
IL_4V4V_0541/B0/24:30,
1/B0/510:516		Triple sheared with non-canonical cWW
geometric
IL_4V9F_001
IL_04021.2
IL_4V4V_0551/B0/36:37,
1/B0/442:444		Single bulged A
homologous
IL_4WF9_002
IL_31462.6
IL_4V4V_0561/B0/42:45,
1/B0/433:437		Major groove platform with extra cWW
geometric
IL_4V9F_003
IL_51387.2
IL_4V4V_0571/B0/81:85,
1/B0/97:105		Kink-turn
homologous
IL_4WF9_004
IL_01488.3
IL_4V4V_1561/B0/183:184,
1/B0/212:214		Single stack bend
homologous
IL_7A0S_005
IL_90729.1
IL_4V4V_0591/B0/188:194,
1/B0/201:208		8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_006
IL_04346.10
IL_4V4V_1391/B0/239:245,
1/B0/253:258		No text annotation
homologous
IL_9DFE_007
IL_26307.2
IL_4V4V_0611/B0/269:271,
1/B0/366:370		No text annotation
IL_4V4V_0621/B0/273:281,
1/B0/359:364		No text annotation
IL_4V4V_1571/B0/285:290,
1/B0/350:355		No text annotation
IL_4V4V_0641/B0/481:485,
1/B0/495:509		No text annotation
geometric
IL_4V9F_014
IL_31504.1
IL_4V4V_0651/B0/564:566,
1/B0/575:577		Isolated non-canonical cWW pair
geometric
IL_4P3U_007
IL_28037.2
IL_4V4V_0661/B0/702:707,
1/B0/724:730		No text annotation
geometric
IL_4V88_462
NA
IL_4V4V_0671/B0/738:741,
1/B0/756:758		No text annotation
geometric
IL_6CZR_136
NA
IL_4V4V_0681/B0/837:838,
1/B0/940:942		No text annotation
homologous
IL_9DFE_022
IL_90729.1
IL_4V4V_1581/B0/844:848,
1/B0/930:934		No text annotation
IL_4V4V_0701/B0/856:862,
1/B0/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_4WF9_031
IL_29198.2
IL_4V4V_0711/B0/862:863,
1/B0/913:915		Minor groove platform
geometric
IL_4V9F_034
IL_51454.3
IL_4V4V_0721/B0/864:868,
1/B0/909:912		C-loop
homologous
IL_7RQB_029
NA
IL_4V4V_0731/B0/870:872,
1/B0/905:907		Isolated near basepair
homologous
IL_7A0S_030
IL_42997.3
IL_4V4V_0741/B0/875:879,
1/B0/898:902		No text annotation
geometric
IL_5TBW_121
NA
IL_4V4V_1431/B0/998:1002,
1/B0/1153:1157		No text annotation
homologous
IL_9DFE_035
IL_38507.2
IL_4V4V_0761/B0/1004:1013,
1/B0/1149:1151		No text annotation
IL_4V4V_0771/B0/1018:1024,
1/B0/1140:1144		Kink-turn related
geometric
IL_4WF9_039
IL_57188.5
IL_4V4V_1441/B0/1018:1034,
1/B0/1121:1144		No text annotation
IL_4V4V_0781/B0/1024:1030,
1/B0/1124:1140		No text annotation
homologous
IL_7A0S_037
IL_50715.3
IL_4V4V_0791/B0/1031:1034,
1/B0/1121:1123		Isolated non-canonical cWW pair
homologous
IL_7RQB_041
NA
IL_4V4V_0801/B0/1038:1041,
1/B0/1114:1117		Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
IL_85033.2
IL_4V4V_0811/B0/1043:1051,
1/B0/1108:1112		No text annotation
IL_4V4V_0821/B0/1059:1062,
1/B0/1076:1079		No text annotation
homologous
IL_5J7L_285
IL_92446.2
IL_4V4V_0831/B0/1087:1090,
1/B0/1101:1102		Major groove platform
geometric
IL_4V9F_044
IL_48076.6
IL_4V4V_1461/B0/1196:1198,
1/B0/1247:1250		Isolated cWS basepair
homologous
IL_4WF9_044
IL_42997.3
IL_4V4V_1471/B0/1202:1206,
1/B0/1240:1243		Tandem non-canonical cWW pairs
geometric
IL_4K27_001
IL_85033.2
IL_4V4V_0861/B0/1208:1215,
1/B0/1234:1238		Kink-turn
homologous
IL_5J7L_288
IL_70923.9
IL_4V4V_0871/B0/1319:1323,
1/B0/1331:1333		C-loop
homologous
IL_7RQB_051
NA
IL_4V4V_0881/B0/1350:1355,
1/B0/1376:1381		UAA/GAN with extra cWW
geometric
IL_4WF9_104
IL_49767.8
IL_4V4V_0891/B0/1357:1359,
1/B0/1372:1374		Isolated non-canonical cWW contact
geometric
IL_5UNE_009
IL_44465.1
IL_4V4V_0901/B0/1359:1362,
1/B0/1369:1372		Tandem non-canonical cWW pairs
geometric
IL_5EW4_002
IL_85033.2
IL_4V4V_1481/B0/1413:1429,
1/B0/1564:1589		No text annotation
IL_4V4V_1491/B0/1433:1435,
1/B0/1557:1559		No text annotation
homologous
IL_7A0S_052
IL_14688.1
IL_4V4V_0921/B0/1436:1440,
1/B0/1551:1556		No text annotation
IL_4V4V_0931/B0/1449:1451,
1/B0/1461:1462		Single stack bend
homologous
IL_7RQB_058
NA
IL_4V4V_0941/B0/1472:1474,
1/B0/1518:1519		No text annotation
IL_4V4V_1501/B0/1474:1482,
1/B0/1506:1518		No text annotation
IL_4V4V_0951/B0/1650:1656,
1/B0/2004:2007		No text annotation
IL_4V4V_0961/B0/1663:1666,
1/B0/1994:1997		No text annotation
IL_4V4V_1511/B0/1663:1674,
1/B0/1990:1997		No text annotation
IL_4V4V_0971/B0/1666:1674,
1/B0/1990:1994		No text annotation
geometric
IL_8C3A_484
NA
IL_4V4V_0981/B0/1686:1691,
1/B0/1696:1702		tSH-tSH-tHH-tHS
homologous
IL_7RQB_068
NA
IL_4V4V_1591/B0/1770:1771,
1/B0/1980:1982		Single bulged A
homologous
IL_5J7L_312
IL_31462.6
IL_4V4V_1001/B0/1798:1804,
1/B0/1813:1821		Kink-turn related
geometric
IL_4V9F_065
IL_17069.5
IL_4V4V_1011/B0/1933:1934,
1/B0/1964:1967		Bulged stacked bases
homologous
IL_4WF9_076
IL_22551.4
IL_4V4V_1021/B0/1934:1945,
1/B0/1961:1964		No text annotation
homologous
IL_4WF9_077
IL_42218.2
IL_4V4V_1601/B0/2045:2052,
1/B0/2617:2623		No text annotation
IL_4V4V_1031/B0/2049:2053,
1/B0/2616:2619		No text annotation
IL_4V4V_1041/B0/2067:2069,
1/B0/2442:2443		Single bulged U
homologous
IL_7A0S_075
IL_89505.4
IL_4V4V_1051/B0/2081:2083,
1/B0/2236:2239		Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA
IL_4V4V_1061/B0/2085:2087,
1/B0/2232:2234		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
IL_28037.2
IL_4V4V_1071/B0/2103:2105,
1/B0/2184:2186		Isolated non-canonical cWW pair
geometric
IL_4YHW_001
IL_87907.2
IL_4V4V_1081/B0/2297:2299,
1/B0/2317:2321		Isolated tHS basepair with bulges
geometric
IL_4V9F_080
IL_61476.2
IL_4V4V_1091/B0/2350:2353,
1/B0/2364:2367		Tandem non-canonical cWW pairs
geometric
IL_1JID_002
IL_85033.2
IL_4V4V_1101/B0/2454:2455,
1/B0/2496:2498		Major groove platform
homologous
IL_7RQB_092
NA
IL_4V4V_1111/B0/2457:2461,
1/B0/2489:2494		No text annotation
IL_4V4V_1121/B0/2466:2470,
1/B0/2480:2484		Triple sheared
homologous
IL_4WF9_093
IL_17948.2
IL_4V4V_1131/B0/2507:2508,
1/B0/2580:2582		Major groove platform
homologous
IL_7RQB_096
NA
IL_4V4V_1141/B0/2510:2512,
1/B0/2574:2578		Isolated non-canonical cWW pair
geometric
IL_4V9F_087
IL_07785.1
IL_4V4V_1151/B0/2512:2513,
1/B0/2571:2574		Multiple bulged bases
homologous
IL_7A0S_090
IL_42626.2
IL_4V4V_1161/B0/2522:2523,
1/B0/2540:2543		Major groove platform with intercalation
homologous
IL_7RQB_099
NA
IL_4V4V_1171/B0/2591:2592,
1/B0/2601:2603		Single bulged A
homologous
IL_5J7L_344
IL_31462.6
IL_4V4V_1181/B0/2636:2640,
1/B0/2774:2782		tSH-tHS-tHW
homologous
IL_7RQB_102
NA
IL_4V4V_1191/B0/2652:2658,
1/B0/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_4V9F_092
IL_26307.2
IL_4V4V_1201/B0/2680:2684,
1/B0/2725:2727		C-loop
homologous
IL_4WF9_101
IL_63596.11
IL_4V4V_1541/B0/2687:2691,
1/B0/2718:2722		UAA/GAN
geometric
IL_4V9F_094
IL_23774.1
IL_4V4V_1221/B0/2695:2696,
1/B0/2711:2714		Multiple bulged bases
homologous
IL_5J7L_349
IL_42626.2
IL_4V4V_1231/B0/2737:2742,
1/B0/2762:2767		UAA/GAN with extra cWW
homologous
IL_4WF9_104
IL_49767.8
IL_4V4V_1611/B0/2838:2839,
1/B0/2878:2880		Major groove intercalation
homologous
IL_9DFE_107
IL_61258.15
IL_4V4V_1251/B0/2843:2846,
1/B0/2870:2874		No text annotation
geometric
IL_1GID_008
NA
IL_4V4V_1261/B0/2847:2852,
1/B0/2865:2869		tHS double platform
homologous
IL_4WF9_108
IL_70411.2
IL_4V4V_1271/B9/17:21,
1/B9/62:67		No text annotation
homologous
IL_7A0S_110
NA
IL_4V4V_1281/B9/23:28,
1/B9/56:60		No text annotation
IL_4V4V_1621/B9/30:31,
1/B9/51:54		Major groove minor groove platform; mini C-loop
homologous
IL_4WF9_126
IL_68140.4
IL_4V4V_1301/B9/71:73,
1/B9/103:105		Isolated non-canonical cWW pair
geometric
IL_4J50_002
IL_87907.2
IL_4V4V_1311/B9/73:79,
1/B9/97:103		No text annotation

Problematic loops

#loop idProblemSequence
IL_4V4V_132No text annotation
IL_4V4V_133No text annotation
IL_4V4V_028Kink-turn related
IL_4V4V_046No text annotation
IL_4V4V_058No text annotation
IL_4V4V_138No text annotation
IL_4V4V_0608x7 Sarcin-Ricin; G-bulge
IL_4V4V_140No text annotation
IL_4V4V_063No text annotation
IL_4V4V_069No text annotation
IL_4V4V_141No text annotation
IL_4V4V_142No text annotation
IL_4V4V_075UAA/GAN with extra cWW
IL_4V4V_145No text annotation
IL_4V4V_084Partly complementary
IL_4V4V_085No text annotation
IL_4V4V_091Tandem non-canonical cWW pairs
IL_4V4V_099Tandem non-canonical cWW pairs
IL_4V4V_152Isolated non-canonical cWW pair
IL_4V4V_153No text annotation
IL_4V4V_121No text annotation
IL_4V4V_155Isolated non-canonical cWW pair
IL_4V4V_124Isolated non-canonical cWW with bulges
IL_4V4V_129No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V4V_0011/AA/46:47,
1/AA/361:369,
1/AA/392:395		No text annotation
J3_4V4V_0181/AA/46:52,
1/AA/359:369,
1/AA/392:395		No text annotation
J3_4V4V_0021/AA/586:588,
1/AA/651:654,
1/AA/754:755		No text annotation
homologous
J3_5J7L_002
J3_56052.5
J3_4V4V_0311/AA/586:588,
1/AA/651:655,
1/AA/751:755		No text annotation
homologous
J3_4LFB_015
J3_17385.4
J3_4V4V_0201/AA/672:677,
1/AA/713:725,
1/AA/732:734		No text annotation
J3_4V4V_0031/AA/826:829,
1/AA/857:861,
1/AA/868:874		No text annotation
homologous
J3_4LFB_001
J3_85054.4
J3_4V4V_0211/AA/933:939,
1/AA/1344:1350,
1/AA/1372:1384		No text annotation
J3_4V4V_0041/AA/955:962,
1/AA/973:984,
1/AA/1221:1225		No text annotation
homologous
J3_4LFB_004
J3_83516.4
J3_4V4V_0051/AA/1063:1068,
1/AA/1107:1113,
1/AA/1187:1193		No text annotation
homologous
J3_4LFB_007
J3_08394.3
J3_4V4V_0321/AA/1073:1074,
1/AA/1083:1086,
1/AA/1099:1102		No text annotation
homologous
J3_4LFB_017
J3_79369.1
J3_4V4V_0071/AA/1116:1118,
1/AA/1155:1161,
1/AA/1175:1184		No text annotation
geometric
J3_4LFB_018
J3_17791.2
J3_4V4V_0081/B0/30:31,
1/B0/474:481,
1/B0/509:510		No text annotation
homologous
J3_5J7L_036
J3_60031.2
J3_4V4V_0231/B0/30:31,
1/B0/474:485,
1/B0/495:510		No text annotation
geometric
J3_4V9F_012
J3_24879.1
J3_4V4V_0241/B0/32:35,
1/B0/445:461,
1/B0/468:473		No text annotation
homologous
J3_9DFE_003
J3_30040.2
J3_4V4V_0331/B0/297:302,
1/B0/315:325,
1/B0/337:341		No text annotation
J3_4V4V_0341/B0/674:689,
1/B0/773:777,
1/B0/787:806		No text annotation
J3_4V4V_0091/B0/697:700,
1/B0/732:736,
1/B0/760:765		No text annotation
geometric
J3_5TBW_005
NA
J3_4V4V_0101/B0/1053:1058,
1/B0/1080:1087,
1/B0/1102:1106		No text annotation
J3_4V4V_0111/B0/1298:1303,
1/B0/1625:1628,
1/B0/1638:1642		No text annotation
geometric
J3_4V9F_005
J3_32852.6
J3_4V4V_0121/B0/1306:1309,
1/B0/1605:1611,
1/B0/1620:1622		No text annotation
geometric
J3_4V9F_006
J3_19545.2
J3_4V4V_0271/B0/1344:1350,
1/B0/1381:1386,
1/B0/1401:1403		No text annotation
J3_4V4V_0131/B0/2090:2093,
1/B0/2196:2200,
1/B0/2223:2229		No text annotation
J3_4V4V_0281/B0/2282:2284,
1/B0/2384:2395,
1/B0/2421:2427		No text annotation
geometric
J3_4V9F_018
J3_44792.1
J3_4V4V_0291/B0/2285:2289,
1/B0/2343:2347,
1/B0/2370:2383		No text annotation
J3_4V4V_0141/B0/2295:2297,
1/B0/2321:2323,
1/B0/2332:2337		No text annotation
homologous
J3_4WF9_008
J3_61124.2
J3_4V4V_0151/B0/2517:2520,
1/B0/2545:2548,
1/B0/2560:2567		No text annotation
J3_4V4V_0161/B0/2812:2815,
1/B0/2831:2836,
1/B0/2882:2888		No text annotation
homologous
J3_5J7L_048
J3_64069.1
J3_4V4V_0171/B9/10:16,
1/B9/68:71,
1/B9/105:110		No text annotation
J3_4V4V_0351/B9/10:28,
1/B9/56:79,
1/B9/97:110		No text annotation
J4_4V4V_0011/AA/115:122,
1/AA/239:240,
1/AA/286:289,
1/AA/311:312		No text annotation
homologous
J4_4LFB_001
J4_35578.3
J4_4V4V_0021/AA/142:144,
1/AA/178:184,
1/AA/193:198,
1/AA/219:221		No text annotation
homologous
J4_5J7L_002
J4_01665.1
J4_4V4V_0031/AA/569:577,
1/AA/764:769,
1/AA/810:821,
1/AA/879:881		No text annotation
J4_4V4V_0041/AA/943:946,
1/AA/1235:1241,
1/AA/1296:1303,
1/AA/1334:1340		No text annotation
J4_4V4V_0051/AA/990:1007,
1/AA/1022:1028,
1/AA/1033:1047,
1/AA/1210:1215		No text annotation
J4_4V4V_0061/AU/7:10,
1/AU/25:27,
1/AU/43:49,
1/AU/65:66		No text annotation
homologous
J4_7EQJ_002
J4_70449.28
J4_4V4V_0071/AV/7:10,
1/AV/25:27,
1/AV/43:49,
1/AV/65:66		No text annotation
homologous
J4_7EQJ_002
J4_70449.28
J4_4V4V_0081/AW/7:10,
1/AW/25:27,
1/AW/43:49,
1/AW/65:66		No text annotation
homologous
J4_7EQJ_002
J4_70449.28
J4_4V4V_0091/B0/268:269,
1/B0/370:375,
1/B0/399:406,
1/B0/421:424		No text annotation
homologous
J4_5J7L_018
J4_45801.6
J4_4V4V_0101/B0/601:604,
1/B0/624:628,
1/B0/635:638,
1/B0/650:656		No text annotation
J4_4V4V_0171/B0/1270:1276,
1/B0/1294:1295,
1/B0/1645:1656,
1/B0/2004:2010		No text annotation
J4_4V4V_0121/B0/1310:1314,
1/B0/1338:1343,
1/B0/1404:1405,
1/B0/1597:1604		No text annotation
homologous
J4_5J7L_022
J4_69051.6
J4_4V4V_0181/B0/1444:1446,
1/B0/1465:1468,
1/B0/1523:1529,
1/B0/1542:1547		No text annotation
J4_4V4V_0141/B0/1772:1776,
1/B0/1788:1792,
1/B0/1827:1831,
1/B0/1974:1979		No text annotation
J4_4V4V_0191/B0/1833:1860,
1/B0/1882:1906,
1/B0/1924:1945,
1/B0/1961:1972		No text annotation
J4_4V4V_0161/B0/2643:2646,
1/B0/2674:2679,
1/B0/2728:2735,
1/B0/2769:2771		No text annotation
J5_4V4V_0011/AA/36:39,
1/AA/403:406,
1/AA/436:442,
1/AA/492:500,
1/AA/545:548		No text annotation
homologous
J5_4LFB_001
J5_70703.1
J5_4V4V_0021/AA/58:61,
1/AA/106:113,
1/AA/314:316,
1/AA/337:339,
1/AA/350:354		No text annotation
homologous
J5_4LFB_002
J5_59910.6
J5_4V4V_0031/B0/584:589,
1/B0/668:674,
1/B0/806:812,
1/B0/1195:1196,
1/B0/1250:1256		No text annotation
J5_4V4V_0041/B0/1674:1682,
1/B0/1706:1707,
1/B0/1751:1752,
1/B0/1756:1764,
1/B0/1988:1990		No text annotation
homologous
J5_5J7L_016
J5_62523.6
J5_4V4V_0071/B0/2054:2064,
1/B0/2446:2454,
1/B0/2498:2506,
1/B0/2583:2588,
1/B0/2606:2615		No text annotation
J5_4V4V_0061/B0/2070:2077,
1/B0/2243:2246,
1/B0/2258:2259,
1/B0/2281:2282,
1/B0/2427:2441		No text annotation
J6_4V4V_0011/B0/2070:2077,
1/B0/2243:2246,
1/B0/2258:2259,
1/B0/2281:2284,
1/B0/2384:2395,
1/B0/2421:2441		No text annotation
J7_4V4V_0011/B0/817:822,
1/B0/835:838,
1/B0/940:946,
1/B0/971:976,
1/B0/987:991,
1/B0/1163:1164,
1/B0/1185:1190		No text annotation
J9_4V4V_0011/B0/45:57,
1/B0/70:77,
1/B0/109:122,
1/B0/129:150,
1/B0/176:183,
1/B0/214:224,
1/B0/231:235,
1/B0/262:266,
1/B0/426:433		No text annotation

Problematic loops

#loop idProblemSequence
J3_4V4V_019No text annotation
J3_4V4V_006No text annotation
J3_4V4V_022No text annotation
J3_4V4V_025No text annotation
J3_4V4V_026No text annotation
J3_4V4V_030No text annotation
J4_4V4V_011No text annotation
J4_4V4V_013No text annotation
J4_4V4V_015No text annotation
J5_4V4V_005No text annotation

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