HL_4V4V_030

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGAUCAGAAUGCC

Length

13 nucleotides

Bulged bases

4V4V|1|AA|A|1362, 4V4V|1|AA|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|AA|G|1355
4V4V|1|AA|G|1356
4V4V|1|AA|A|1357
4V4V|1|AA|U|1358
4V4V|1|AA|C|1359
4V4V|1|AA|A|1360
4V4V|1|AA|G|1361
4V4V|1|AA|A|1362
4V4V|1|AA|A|1363
4V4V|1|AA|U|1364
4V4V|1|AA|G|1365
4V4V|1|AA|C|1366
4V4V|1|AA|C|1367

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S ribosomal subunit protein S9

Chain AJ

30S ribosomal subunit protein S10

Chain AN

30S ribosomal subunit protein S14

Chain AS

30S ribosomal subunit protein S19