HL_4V4V_031

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V4V|1|AA|U|1451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_031 not in the Motif Atlas

Homologous match to HL_4LFB_031

Geometric discrepancy: 0.1498

The information below is about HL_4LFB_031

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V4V|1|AA|C|1449
4V4V|1|AA|U|1450
4V4V|1|AA|U|1451
4V4V|1|AA|C|1452
4V4V|1|AA|G|1453
4V4V|1|AA|G|1454

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal subunit protein S20