HL_4V4V_038
3D structure
- PDB id
- 4V4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- GUUCGAUCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4V_038 not in the Motif Atlas
- Homologous match to HL_1QTQ_003
- Geometric discrepancy: 0.2327
- The information below is about HL_1QTQ_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
4V4V|1|AV|G|53
4V4V|1|AV|U|54
4V4V|1|AV|U|55
4V4V|1|AV|C|56
4V4V|1|AV|G|57
4V4V|1|AV|A|58
4V4V|1|AV|U|59
4V4V|1|AV|C|60
4V4V|1|AV|C|61
Current chains
- Chain AV
- tRNA
Nearby chains
- Chain B0
- Large subunit ribosomal RNA; LSU rRNA
- Chain BD
- 50S ribosomal protein L5
- Chain BU
- 50S ribosomal protein L27
Coloring options: