HL_4V4V_043

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UGAUAUGAA

Length

9 nucleotides

Bulged bases

4V4V|1|B0|A|91

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_043 not in the Motif Atlas

Homologous match to HL_7RQB_002

Geometric discrepancy: 0.5836

The information below is about HL_7RQB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

4V4V|1|B0|U|87
4V4V|1|B0|G|88
4V4V|1|B0|A|89
4V4V|1|B0|U|90
4V4V|1|B0|A|91
4V4V|1|B0|U|92
4V4V|1|B0|G|93
4V4V|1|B0|A|94
4V4V|1|B0|A|95

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L24

Chain BW

50S ribosomal protein L29