3D structure

PDB id
4V4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
GUGACAGCC
Length
9 nucleotides
Bulged bases
4V4V|1|B0|G|329, 4V4V|1|B0|A|330, 4V4V|1|B0|C|331
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V4V_050 not in the Motif Atlas
Homologous match to HL_7RQB_012
Geometric discrepancy: 0.1248
The information below is about HL_7RQB_012
Detailed Annotation
T-loop with unstacked turn
Broad Annotation
T-loop
Motif group
HL_08002.9
Basepair signature
cWW-tWH-F-F
Number of instances in this motif group
19

Unit IDs

4V4V|1|B0|G|327
4V4V|1|B0|U|328
4V4V|1|B0|G|329
4V4V|1|B0|A|330
4V4V|1|B0|C|331
4V4V|1|B0|A|332
4V4V|1|B0|G|333
4V4V|1|B0|C|334
4V4V|1|B0|C|335

Current chains

Chain B0
23S ribosomal RNA

Nearby chains

Chain BJ
50S ribosomal protein L15
Chain BS
50S ribosomal protein L24

Coloring options:


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