HL_4V4V_050
3D structure
- PDB id
- 4V4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- GUGACAGCC
- Length
- 9 nucleotides
- Bulged bases
- 4V4V|1|B0|G|329, 4V4V|1|B0|A|330, 4V4V|1|B0|C|331
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4V_050 not in the Motif Atlas
- Homologous match to HL_7RQB_012
- Geometric discrepancy: 0.1248
- The information below is about HL_7RQB_012
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.9
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 19
Unit IDs
4V4V|1|B0|G|327
4V4V|1|B0|U|328
4V4V|1|B0|G|329
4V4V|1|B0|A|330
4V4V|1|B0|C|331
4V4V|1|B0|A|332
4V4V|1|B0|G|333
4V4V|1|B0|C|334
4V4V|1|B0|C|335
Current chains
- Chain B0
- 23S ribosomal RNA
Nearby chains
- Chain BJ
- 50S ribosomal protein L15
- Chain BS
- 50S ribosomal protein L24
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