HL_4V4V_053

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_053 not in the Motif Atlas

Homologous match to HL_4WF9_015

Geometric discrepancy: 0.0863

The information below is about HL_4WF9_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4V4V|1|B0|C|462
4V4V|1|B0|G|463
4V4V|1|B0|U|464
4V4V|1|B0|G|465
4V4V|1|B0|A|466
4V4V|1|B0|G|467

Current chains

Chain B0

23S ribosomal RNA

Nearby chains