3D structure

PDB id
4V4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
UGAAAGG
Length
7 nucleotides
Bulged bases
4V4V|1|B0|A|781, 4V4V|1|B0|G|784
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V4V_062 not in the Motif Atlas
Geometric match to HL_6JQ6_004
Geometric discrepancy: 0.3223
The information below is about HL_6JQ6_004
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

4V4V|1|B0|U|779
4V4V|1|B0|G|780
4V4V|1|B0|A|781
4V4V|1|B0|A|782
4V4V|1|B0|A|783
4V4V|1|B0|G|784
4V4V|1|B0|G|785

Current chains

Chain B0
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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