HL_4V4V_062
3D structure
- PDB id
- 4V4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- UGAAAGG
- Length
- 7 nucleotides
- Bulged bases
- 4V4V|1|B0|A|781, 4V4V|1|B0|G|784
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4V_062 not in the Motif Atlas
- Geometric match to HL_6JQ6_004
- Geometric discrepancy: 0.3223
- The information below is about HL_6JQ6_004
- Detailed Annotation
- UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_34617.5
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 57
Unit IDs
4V4V|1|B0|U|779
4V4V|1|B0|G|780
4V4V|1|B0|A|781
4V4V|1|B0|A|782
4V4V|1|B0|A|783
4V4V|1|B0|G|784
4V4V|1|B0|G|785
Current chains
- Chain B0
- 23S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: