HL_4V4V_072

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

4V4V|1|B0|U|1325, 4V4V|1|B0|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_072 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.1411

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4V4V|1|B0|G|1324
4V4V|1|B0|U|1325
4V4V|1|B0|U|1326
4V4V|1|B0|A|1327
4V4V|1|B0|A|1328
4V4V|1|B0|U|1329
4V4V|1|B0|C|1330

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L22