HL_4V4V_078

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4V4V|1|B0|A|1614, 4V4V|1|B0|A|1616, 4V4V|1|B0|A|1618

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_078 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1767

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4V4V|1|B0|C|1612
4V4V|1|B0|G|1613
4V4V|1|B0|A|1614
4V4V|1|B0|C|1615
4V4V|1|B0|A|1616
4V4V|1|B0|C|1617
4V4V|1|B0|A|1618
4V4V|1|B0|G|1619

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L22