HL_4V4V_088

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V4V|1|B0|A|2030, 4V4V|1|B0|A|2031, 4V4V|1|B0|G|2032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_088 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.2577

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

4V4V|1|B0|G|2027
4V4V|1|B0|U|2028
4V4V|1|B0|G|2029
4V4V|1|B0|A|2030
4V4V|1|B0|A|2031
4V4V|1|B0|G|2032
4V4V|1|B0|A|2033
4V4V|1|B0|U|2034
4V4V|1|B0|G|2035
4V4V|1|B0|C|2036

Current chains

Chain B0

23S ribosomal RNA

Nearby chains