HL_4V4V_091

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V4V|1|B0|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_091 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.1458

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|B0|C|2248
4V4V|1|B0|U|2249
4V4V|1|B0|G|2250
4V4V|1|B0|G|2251
4V4V|1|B0|G|2252
4V4V|1|B0|G|2253
4V4V|1|B0|C|2254
4V4V|1|B0|G|2255
4V4V|1|B0|G|2256

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain BK

50S ribosomal protein L16